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The map label for this gene is ycjZ [H]

Identifier: 85058594

GI number: 85058594

Start: 1045681

End: 1046376

Strand: Reverse

Name: ycjZ [H]

Synonym: SG0616

Alternate gene names: 85058594

Gene position: 1046376-1045681 (Counterclockwise)

Preceding gene: 85058595

Following gene: 85058593

Centisome position: 25.09

GC content: 54.89

Gene sequence:

>696_bases
ATGCGTTATCGACACTCGTTAAAGAGGACAGTTTGGGTGCTAAAAGAGAACTTCAATGATCTCATGGCGTTCCTCGTTGT
CGCCGAAGAGCGCAGTTTTAACCGTGCGACGGCGCGGCTGGGGTTATCGCAATCCGCCTTAAGCCACTCCATGCACAATC
TGGAAGAGCGGATGGGTATTCGTCTGCTCACGCGTACCACGCACAGCGTATCGCCGACCCAGGCCGGTGACCGATTGCTC
GCACGTATTGGGCCACATTTCAACGATATTGAAATTGAGCTTAATGCGATGAAAGACATGCGCGATGTGCCGGCAGGAAA
TATCCGGATCACCGCCGGTGAGCATGCCACCGATTATATTCTCTGGCCGGTATTGCGCACCTTTATGCCGCAATGGCCGG
ATATACAGGTTGAGGTGACGGTGGATAATGCCTTGACTGATATCGTTAGCCACCGTTTTGATGCAGGGGTCCGCCTGGAA
GAGCAAGGTGGCCAAAGATATGGTGGCGATCCCGATAGGTCCGCCAATGAGGATGGCGGTCGTAGGATCACCCGCTTATT
TCACCCGCCATCCACCACCGCTGACGCCATCGGATCTGCAACACCACCGCTGTATCTCGATGCGCTCGTTGACGCTGGGC
GGGCTGATGCCTTGGGAATTTGCACGCGACTGCAAAGAATTGCGGGTACGGATTGA

Upstream 100 bases:

>100_bases
TCTGAAGGGATGCGACCAGCCTATCAGCCCACCAGCGTGACGATTAGCGGGGCAAAGAAGAATAGCGTTATGAATCTTAT
TCATCAGTCAACCCGCTATA

Downstream 100 bases:

>100_bases
GGGCCAGTTGATTATCAATGCCCTCCGCCATCGTATTGCAGAGGCGAAGGCCGATATGGGTCTGATTTACCTGCCTGAAG
ACACCGTCGCTCTGGAAATT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MRYRHSLKRTVWVLKENFNDLMAFLVVAEERSFNRATARLGLSQSALSHSMHNLEERMGIRLLTRTTHSVSPTQAGDRLL
ARIGPHFNDIEIELNAMKDMRDVPAGNIRITAGEHATDYILWPVLRTFMPQWPDIQVEVTVDNALTDIVSHRFDAGVRLE
EQGGQRYGGDPDRSANEDGGRRITRLFHPPSTTADAIGSATPPLYLDALVDAGRADALGICTRLQRIAGTD

Sequences:

>Translated_231_residues
MRYRHSLKRTVWVLKENFNDLMAFLVVAEERSFNRATARLGLSQSALSHSMHNLEERMGIRLLTRTTHSVSPTQAGDRLL
ARIGPHFNDIEIELNAMKDMRDVPAGNIRITAGEHATDYILWPVLRTFMPQWPDIQVEVTVDNALTDIVSHRFDAGVRLE
EQGGQRYGGDPDRSANEDGGRRITRLFHPPSTTADAIGSATPPLYLDALVDAGRADALGICTRLQRIAGTD
>Mature_231_residues
MRYRHSLKRTVWVLKENFNDLMAFLVVAEERSFNRATARLGLSQSALSHSMHNLEERMGIRLLTRTTHSVSPTQAGDRLL
ARIGPHFNDIEIELNAMKDMRDVPAGNIRITAGEHATDYILWPVLRTFMPQWPDIQVEVTVDNALTDIVSHRFDAGVRLE
EQGGQRYGGDPDRSANEDGGRRITRLFHPPSTTADAIGSATPPLYLDALVDAGRADALGICTRLQRIAGTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=151, Percent_Identity=54.3046357615894, Blast_Score=168, Evalue=2e-43,
Organism=Escherichia coli, GI1787128, Length=146, Percent_Identity=46.5753424657534, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1786401, Length=145, Percent_Identity=26.8965517241379, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=34.9593495934959, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=149, Percent_Identity=26.8456375838926, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=31.0344827586207, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87081978, Length=142, Percent_Identity=27.4647887323944, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 25785; Mature: 25785

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRHSLKRTVWVLKENFNDLMAFLVVAEERSFNRATARLGLSQSALSHSMHNLEERMGI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCE
RLLTRTTHSVSPTQAGDRLLARIGPHFNDIEIELNAMKDMRDVPAGNIRITAGEHATDYI
EEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCCCEEEEECCCCCHHH
LWPVLRTFMPQWPDIQVEVTVDNALTDIVSHRFDAGVRLEEQGGQRYGGDPDRSANEDGG
HHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCC
RRITRLFHPPSTTADAIGSATPPLYLDALVDAGRADALGICTRLQRIAGTD
CEEHEEECCCCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYRHSLKRTVWVLKENFNDLMAFLVVAEERSFNRATARLGLSQSALSHSMHNLEERMGI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCE
RLLTRTTHSVSPTQAGDRLLARIGPHFNDIEIELNAMKDMRDVPAGNIRITAGEHATDYI
EEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCCCEEEEECCCCCHHH
LWPVLRTFMPQWPDIQVEVTVDNALTDIVSHRFDAGVRLEEQGGQRYGGDPDRSANEDGG
HHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCC
RRITRLFHPPSTTADAIGSATPPLYLDALVDAGRADALGICTRLQRIAGTD
CEEHEEECCCCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]