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The map label for this gene is yhbU [H]

Identifier: 85058362

GI number: 85058362

Start: 686252

End: 687061

Strand: Reverse

Name: yhbU [H]

Synonym: SG0384

Alternate gene names: 85058362

Gene position: 687061-686252 (Counterclockwise)

Preceding gene: 85058365

Following gene: 85058347

Centisome position: 16.47

GC content: 58.77

Gene sequence:

>810_bases
ATGGAACTGCTCTGCCCGGCCGGTGCCCTACAGACACTCAAGGCGGCGATTGATAACGGCGCTGACGCGGTGTATATCGG
CCTGAAGGACGATACTAACACCCGTCATTTCGCCGGCCTTAATTTCACCGATCAGCGCTTACAGGAGGCGAAGCGCTATG
TGCACCGTCATGGACGCAAGCTGCATATCGCTATTAACACGTTTGCCCATCCGAACGGTTACGCCCGCTGGCAGCACGCG
ATCGACACGGCGGCGCAAAACGGCGCCGATACGCGGATTTGGCAATGCTGGCCCTACGCCGCTGAACGCTATCCCACTCT
CGAGCGTCATGTCTCGGTGCAGGCTTCCGCCACCAATCAGGTGGCGATCCGCTTTTATCAGAAGCAGTTTGACGTGGCGC
GGGTGGTTCTGCCTCGCGTGCTGTCGATGCATCAGGTGAAACAGCTTGCGCAGGTCAGCCCAGTTCCGCTGGAGATGTTT
GCCTTCGTCAGCCTGTGCATTATGGCCGAGGGACGTTGCTACCTCTCTTCCTATTTAACCGGCGAATCGCCCAACACGGT
CGGCGCCTGCTCGCCGGCGCGATTTGTCAGCTGGCAGCAAACCGCCGCCGGAATAATGGAGGCTCGGCTGAACAATGTGT
TGATTGACCGCTACAAGCCGGATGAAAACGCCGGTTATCCGACCTTGTGCAAGGGCCGCTATTTGGTGGAAGGTCAGCGC
TATCACGCCCTGGAAGAGCCTACCAGTCTGAATACGTTGGCGGCGGCTGCCGGCGTTGTTGGCAGCCAACATCGCCTCGG
TGAAAATTGA

Upstream 100 bases:

>100_bases
CGTGCCTGCGGGGCAAATGCTGTGAATTCAGCCTATTGGCCCGGAATAATTTCTTGCCCTTGCCGGCTATGGCAACAGGC
GGCCACTTCTTAGGAGCTTT

Downstream 100 bases:

>100_bases
AGGCCGCCAGCGCAGTCCCGTCCCGCCTATGTCAGCTAGGTCACTCGCGTCTGGCGGCCATGTCGAAAGGCGTCCAGACC
ACACTCGGCTCGTACCACCG

Product: putative collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MELLCPAGALQTLKAAIDNGADAVYIGLKDDTNTRHFAGLNFTDQRLQEAKRYVHRHGRKLHIAINTFAHPNGYARWQHA
IDTAAQNGADTRIWQCWPYAAERYPTLERHVSVQASATNQVAIRFYQKQFDVARVVLPRVLSMHQVKQLAQVSPVPLEMF
AFVSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVSWQQTAAGIMEARLNNVLIDRYKPDENAGYPTLCKGRYLVEGQR
YHALEEPTSLNTLAAAAGVVGSQHRLGEN

Sequences:

>Translated_269_residues
MELLCPAGALQTLKAAIDNGADAVYIGLKDDTNTRHFAGLNFTDQRLQEAKRYVHRHGRKLHIAINTFAHPNGYARWQHA
IDTAAQNGADTRIWQCWPYAAERYPTLERHVSVQASATNQVAIRFYQKQFDVARVVLPRVLSMHQVKQLAQVSPVPLEMF
AFVSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVSWQQTAAGIMEARLNNVLIDRYKPDENAGYPTLCKGRYLVEGQR
YHALEEPTSLNTLAAAAGVVGSQHRLGEN
>Mature_269_residues
MELLCPAGALQTLKAAIDNGADAVYIGLKDDTNTRHFAGLNFTDQRLQEAKRYVHRHGRKLHIAINTFAHPNGYARWQHA
IDTAAQNGADTRIWQCWPYAAERYPTLERHVSVQASATNQVAIRFYQKQFDVARVVLPRVLSMHQVKQLAQVSPVPLEMF
AFVSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVSWQQTAAGIMEARLNNVLIDRYKPDENAGYPTLCKGRYLVEGQR
YHALEEPTSLNTLAAAAGVVGSQHRLGEN

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=256, Percent_Identity=78.515625, Blast_Score=415, Evalue=1e-117,
Organism=Escherichia coli, GI87081910, Length=193, Percent_Identity=32.1243523316062, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788397, Length=228, Percent_Identity=29.8245614035088, Blast_Score=88, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 29944; Mature: 29944

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGALQTLKAAIDNGADAVYIGLKDDTNTRHFAGLNFTDQRLQEAKRYVHRHGRK
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHCCCE
LHIAINTFAHPNGYARWQHAIDTAAQNGADTRIWQCWPYAAERYPTLERHVSVQASATNQ
EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHEEEEECCCCH
VAIRFYQKQFDVARVVLPRVLSMHQVKQLAQVSPVPLEMFAFVSLCIMAEGRCYLSSYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEHHHHC
GESPNTVGACSPARFVSWQQTAAGIMEARLNNVLIDRYKPDENAGYPTLCKGRYLVEGQR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCEEECCCH
YHALEEPTSLNTLAAAAGVVGSQHRLGEN
HHCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MELLCPAGALQTLKAAIDNGADAVYIGLKDDTNTRHFAGLNFTDQRLQEAKRYVHRHGRK
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHHCCCE
LHIAINTFAHPNGYARWQHAIDTAAQNGADTRIWQCWPYAAERYPTLERHVSVQASATNQ
EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCHHHHEEEEECCCCH
VAIRFYQKQFDVARVVLPRVLSMHQVKQLAQVSPVPLEMFAFVSLCIMAEGRCYLSSYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEHHHHC
GESPNTVGACSPARFVSWQQTAAGIMEARLNNVLIDRYKPDENAGYPTLCKGRYLVEGQR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEECCCEEECCCH
YHALEEPTSLNTLAAAAGVVGSQHRLGEN
HHCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]