| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is nodB [H]
Identifier: 84626026
GI number: 84626026
Start: 4934856
End: 4937558
Strand: Reverse
Name: nodB [H]
Synonym: XOO_4369
Alternate gene names: 84626026
Gene position: 4937558-4934856 (Counterclockwise)
Preceding gene: 84626027
Following gene: 84626025
Centisome position: 99.95
GC content: 63.52
Gene sequence:
>2703_bases GTGACCACATCGCCGTTGCATCGCCTGCTGCTGTGCGCAAGTTGCGTGGGAGTGCTGGCGCTGGCCGGCTGTGGGAAGCA GGGCGCGAGCGATGCGGCCTCCGCCGCGAAATCCTCTGCTGCAACGACCGCAGGAACGCAGGCCGACAAGAGCGCCGACG CTGCGCAGGCATTGATCGCGCAACTGCGCGAACAGCTGGACCGGCACCGCCGCATCATCGTGCTGCTGGCCGATGAGGAC AAGCAGACCCCACGCGATCGCGCCATGTCCAGCAGCGTGGGGCAGCAGCTGTTCCATGAAAATCTCGAGCAGCGCGAACG CATCGCTGCATCGTTCGAAACAGTGCTGACATCCAAGCACGCGAACCGGTTCGCGACGATTGCTGCGGTGCTGGACGAGG TGGAATCGGCGCCGGATCTCTCCGATGCCGACCGCCTCGCCGTTGGCGAGGTATTGCGCGATCTGCATGCGCGCATCGGT CGCGACTCTGCGTTGCCAGCGGTGAAACTGCATCAGCGCATCGGCGAGGATCTGGAGGCGCTGGACGAAATCGAGCGCAG CTACACCAAGGAGCTGACGCAGATCTTCAGTCGCTTCGACCGCAGCCGCGCCATCGTGCCCAAGCGCGAGAAGTGGGACG ACTACGTGGCGCATCTGCGCACGCTGTACACGCGCGAGAAGATCCTGCGTGACCATGGCGTGGTGGAGCCGTATCCGTTC TCGGCACGCGACAGCGACAGCGAAGTGTTCGGCCGCGACCTGCCACCCAAAACAGTGGTGCTGACCTTCGACGATGGTCC GCACAAGGCCTATACCGAAGAGATCGTGGCGATCCTCAAACGCTACGACGTGCCCGGGGTGTTCTTCGAAGTAGGGCGCA ATCTGGGTAGCCCGGATGCCGCCGGCAAACCCAAACTCGCGCCGCTGTCCAAGATCAGCCGCACGCTGATGGAAGAGGGG TATGCCGTTGGAAACCACAGCCTGACCCACGCGCAGTTGTCCAAAACCACCGGCGCAGCGCAGCGCAGCCAGGTACTGGA TACCGACACCTTGCTGCGTGCGGTGGACGACAAGCGCGCGCCGTTGTTCCCGTTTCCGTATGGCGCGCGCACTGCGGAAG GCTTGCAGCTGCTGGGCGAGGCCGGCCTGAAGTCCATCATGTGGAATATCGACTCGCTGGACTGGGCCGACCCGGTGCCG GAATCCATCGTGCAACGCGTGCTCGACCAAGTGAACAAGGCGCAGCGCGGCATTGTGCTGTTCCATGATATTCACGACCG CGCGGTGAAAGCGCTGCCGCAAATTCTTGATCGCCTCATCGCCGATGGTTACCAGTTCGCCGACTGGAATGGTCGCGACT TTTCGGTGGCGCGCGCACCCAGCGCGGTGGCCGATGCCACGGTGACCACCGGCTATGCCCAATCATGGGCGATCGTGATC GGTATCGACGATTACGCACATTGGCCCAAGCTGGAATACGCGGCCAACGATGCGCAGGCGATTGCCAGCACCTTGACCGG ACCGCTGGGATTTCCGTCGTCGCAGGTGATCGTGCTCAAGAACGGTGAGGCGACACGCAACAACATCCTCGCCGCATTTC ACGACCGTCTCGGCGAAGGCCGCATGCAGACCAACGATCGCGTGTTCGTGTTCTTCGCCGGGCACGGCGCCACGCGCCGG CTCGCCTCCGGGCGCGATCTTGGTTACATCGTTCCGGTCGACTCGGACCCGGAGCATCTGGCCAACGATGCGATCGCAAT GAGCGATTTGCAGAACATCGCCGAAAGCCTGCAGGCCAAGCACGTCTTGTTCGTGATGGATGCATGCTACAGCGGGCTGG GATTGACGCGTGGTGGGCCAACGTCCAGCGCGTATCTGCGCGAGAACGCGCGGCGGATTGCACGCCAGATGCTGACCGCC GGCGGTGCCGATCAACAGGTGGCCGATAGCGGGCCCAATGGGCATTCGGTGTTCACCTGGGTGTTGTTGCAGGCATTGGC CGGCAAGGGGGATCTCAATGGCGATGGCTTGATCACCGGAACCGAACTGGCTGCATATGTGGCGCCTGCGGTGCCGGTCG TCTCGGCGCAGACACCGGCATTCGGCAGCCTGCCGGGTTCGCAAGGCGGTGAATTCGTGTTCCAGGTTCCCAGCGGCGAA GAGTTTCTCACTGCAGAGACCGCACAGCTGTCTGCCGATGCGATTGCGCTCAACGGACGCGTGGATGCCGCGCGCCCTGC GCCGGCCACAGCCGGTGCGGCAGCGACGGCAGCGCCGGTCACGGTGAAAACCCTGCAAGGTGGCGAAGCCACGCTGGTGG TGCCCACCGCAGTGAACAGCAGCGACCGCCAACGCGCGCAATTGGCCAACGAACGCGGCTTGCAGTTGTACAAGGAAAAG CGCTACGCCGACGCAGCCGAGCAATTTGCCGAAGCGCTCAAGCTGCGTGCGGATTTTGCACTGGCGGCCAATAACCTTGG TTTTGTGTATTTCCGCCAGGGGCGCTCCGCCGAATCGGCGCGCCGGCTGGAAACTACCTTGAAGATCGATCCGTCGCGTG CGGTGGCCTATCTCAATCTGGGCGATGCGTATGCAGAGGGCGGTGATCGCGAGAAGGCACGCAAGGCCTATTCGACGTAT CTGGAGTTACAGCCGCAAGTCAGCGGTGCGGCGCAGGCGCGTGCGCAGCTGCAATCGCTGTGA
Upstream 100 bases:
>100_bases CATCCGGGCCAACGCCAAGTAAGTTGAAGAAGGCCCGCCGCAAGGCGGGCTTTCTGCATGTCAGCCCGCATCTGTTGTCT CTTTCGCCAAGGACGCCGTC
Downstream 100 bases:
>100_bases CGCAAGCCGGCCGACACGATGTTGCGCGGAGTCGCCAGCAGGGCGCGACCTTGTCGGCACGGATGGATGAGCCGGAAGGA CCCGCGCACAGGTAATAGGC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Nodulation protein B [H]
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MTTSPLHRLLLCASCVGVLALAGCGKQGASDAASAAKSSAATTAGTQADKSADAAQALIAQLREQLDRHRRIIVLLADED KQTPRDRAMSSSVGQQLFHENLEQRERIAASFETVLTSKHANRFATIAAVLDEVESAPDLSDADRLAVGEVLRDLHARIG RDSALPAVKLHQRIGEDLEALDEIERSYTKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTREKILRDHGVVEPYPF SARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSPDAAGKPKLAPLSKISRTLMEEG YAVGNHSLTHAQLSKTTGAAQRSQVLDTDTLLRAVDDKRAPLFPFPYGARTAEGLQLLGEAGLKSIMWNIDSLDWADPVP ESIVQRVLDQVNKAQRGIVLFHDIHDRAVKALPQILDRLIADGYQFADWNGRDFSVARAPSAVADATVTTGYAQSWAIVI GIDDYAHWPKLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGEATRNNILAAFHDRLGEGRMQTNDRVFVFFAGHGATRR LASGRDLGYIVPVDSDPEHLANDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTA GGADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVPVVSAQTPAFGSLPGSQGGEFVFQVPSGE EFLTAETAQLSADAIALNGRVDAARPAPATAGAAATAAPVTVKTLQGGEATLVVPTAVNSSDRQRAQLANERGLQLYKEK RYADAAEQFAEALKLRADFALAANNLGFVYFRQGRSAESARRLETTLKIDPSRAVAYLNLGDAYAEGGDREKARKAYSTY LELQPQVSGAAQARAQLQSL
Sequences:
>Translated_900_residues MTTSPLHRLLLCASCVGVLALAGCGKQGASDAASAAKSSAATTAGTQADKSADAAQALIAQLREQLDRHRRIIVLLADED KQTPRDRAMSSSVGQQLFHENLEQRERIAASFETVLTSKHANRFATIAAVLDEVESAPDLSDADRLAVGEVLRDLHARIG RDSALPAVKLHQRIGEDLEALDEIERSYTKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTREKILRDHGVVEPYPF SARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSPDAAGKPKLAPLSKISRTLMEEG YAVGNHSLTHAQLSKTTGAAQRSQVLDTDTLLRAVDDKRAPLFPFPYGARTAEGLQLLGEAGLKSIMWNIDSLDWADPVP ESIVQRVLDQVNKAQRGIVLFHDIHDRAVKALPQILDRLIADGYQFADWNGRDFSVARAPSAVADATVTTGYAQSWAIVI GIDDYAHWPKLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGEATRNNILAAFHDRLGEGRMQTNDRVFVFFAGHGATRR LASGRDLGYIVPVDSDPEHLANDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTA GGADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVPVVSAQTPAFGSLPGSQGGEFVFQVPSGE EFLTAETAQLSADAIALNGRVDAARPAPATAGAAATAAPVTVKTLQGGEATLVVPTAVNSSDRQRAQLANERGLQLYKEK RYADAAEQFAEALKLRADFALAANNLGFVYFRQGRSAESARRLETTLKIDPSRAVAYLNLGDAYAEGGDREKARKAYSTY LELQPQVSGAAQARAQLQSL >Mature_899_residues TTSPLHRLLLCASCVGVLALAGCGKQGASDAASAAKSSAATTAGTQADKSADAAQALIAQLREQLDRHRRIIVLLADEDK QTPRDRAMSSSVGQQLFHENLEQRERIAASFETVLTSKHANRFATIAAVLDEVESAPDLSDADRLAVGEVLRDLHARIGR DSALPAVKLHQRIGEDLEALDEIERSYTKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTREKILRDHGVVEPYPFS ARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSPDAAGKPKLAPLSKISRTLMEEGY AVGNHSLTHAQLSKTTGAAQRSQVLDTDTLLRAVDDKRAPLFPFPYGARTAEGLQLLGEAGLKSIMWNIDSLDWADPVPE SIVQRVLDQVNKAQRGIVLFHDIHDRAVKALPQILDRLIADGYQFADWNGRDFSVARAPSAVADATVTTGYAQSWAIVIG IDDYAHWPKLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGEATRNNILAAFHDRLGEGRMQTNDRVFVFFAGHGATRRL ASGRDLGYIVPVDSDPEHLANDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTAG GADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVPVVSAQTPAFGSLPGSQGGEFVFQVPSGEE FLTAETAQLSADAIALNGRVDAARPAPATAGAAATAAPVTVKTLQGGEATLVVPTAVNSSDRQRAQLANERGLQLYKEKR YADAAEQFAEALKLRADFALAANNLGFVYFRQGRSAESARRLETTLKIDPSRAVAYLNLGDAYAEGGDREKARKAYSTYL ELQPQVSGAAQARAQLQSL
Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]
COG id: COG4249
COG function: function code R; Uncharacterized protein containing caspase domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide deacetylase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6323339, Length=187, Percent_Identity=26.2032085561497, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011330 - InterPro: IPR002509 [H]
Pfam domain/function: PF01522 Polysacc_deac_1 [H]
EC number: NA
Molecular weight: Translated: 97038; Mature: 96907
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00018 EF_HAND_1 ; PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSPLHRLLLCASCVGVLALAGCGKQGASDAASAAKSSAATTAGTQADKSADAAQALIA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH QLREQLDRHRRIIVLLADEDKQTPRDRAMSSSVGQQLFHENLEQRERIAASFETVLTSKH HHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANRFATIAAVLDEVESAPDLSDADRLAVGEVLRDLHARIGRDSALPAVKLHQRIGEDLEA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH LDEIERSYTKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTREKILRDHGVVEPYPF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSPDA CCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC AGKPKLAPLSKISRTLMEEGYAVGNHSLTHAQLSKTTGAAQRSQVLDTDTLLRAVDDKRA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHCCHHHHHHHHCCCCC PLFPFPYGARTAEGLQLLGEAGLKSIMWNIDSLDWADPVPESIVQRVLDQVNKAQRGIVL CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEE FHDIHDRAVKALPQILDRLIADGYQFADWNGRDFSVARAPSAVADATVTTGYAQSWAIVI EECHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEHHCCCCHHHCCHHCCCCCCCEEEEE GIDDYAHWPKLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGEATRNNILAAFHDRLGEG EECCCCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC RMQTNDRVFVFFAGHGATRRLASGRDLGYIVPVDSDPEHLANDAIAMSDLQNIAESLQAK CCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH HVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTAGGADQQVADSGPNGHSVFTW HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHH VLLQALAGKGDLNGDGLITGTELAAYVAPAVPVVSAQTPAFGSLPGSQGGEFVFQVPSGE HHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEECCCCC EFLTAETAQLSADAIALNGRVDAARPAPATAGAAATAAPVTVKTLQGGEATLVVPTAVNS CEEEHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCC SDRQRAQLANERGLQLYKEKRYADAAEQFAEALKLRADFALAANNLGFVYFRQGRSAESA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHH RRLETTLKIDPSRAVAYLNLGDAYAEGGDREKARKAYSTYLELQPQVSGAAQARAQLQSL HHHHHHEEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TTSPLHRLLLCASCVGVLALAGCGKQGASDAASAAKSSAATTAGTQADKSADAAQALIA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH QLREQLDRHRRIIVLLADEDKQTPRDRAMSSSVGQQLFHENLEQRERIAASFETVLTSKH HHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANRFATIAAVLDEVESAPDLSDADRLAVGEVLRDLHARIGRDSALPAVKLHQRIGEDLEA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH LDEIERSYTKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTREKILRDHGVVEPYPF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSPDA CCCCCCHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC AGKPKLAPLSKISRTLMEEGYAVGNHSLTHAQLSKTTGAAQRSQVLDTDTLLRAVDDKRA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHCCHHHHHHHHCCCCC PLFPFPYGARTAEGLQLLGEAGLKSIMWNIDSLDWADPVPESIVQRVLDQVNKAQRGIVL CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEE FHDIHDRAVKALPQILDRLIADGYQFADWNGRDFSVARAPSAVADATVTTGYAQSWAIVI EECHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEHHCCCCHHHCCHHCCCCCCCEEEEE GIDDYAHWPKLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGEATRNNILAAFHDRLGEG EECCCCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC RMQTNDRVFVFFAGHGATRRLASGRDLGYIVPVDSDPEHLANDAIAMSDLQNIAESLQAK CCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH HVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTAGGADQQVADSGPNGHSVFTW HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHH VLLQALAGKGDLNGDGLITGTELAAYVAPAVPVVSAQTPAFGSLPGSQGGEFVFQVPSGE HHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEECCCCC EFLTAETAQLSADAIALNGRVDAARPAPATAGAAATAAPVTVKTLQGGEATLVVPTAVNS CEEEHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCC SDRQRAQLANERGLQLYKEKRYADAAEQFAEALKLRADFALAANNLGFVYFRQGRSAESA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCHHHH RRLETTLKIDPSRAVAYLNLGDAYAEGGDREKARKAYSTYLELQPQVSGAAQARAQLQSL HHHHHHEEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968; 8850088 [H]