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The map label for this gene is ymdC [C]

Identifier: 84625895

GI number: 84625895

Start: 4790405

End: 4792420

Strand: Reverse

Name: ymdC [C]

Synonym: XOO_4238

Alternate gene names: 84625895

Gene position: 4792420-4790405 (Counterclockwise)

Preceding gene: 84625896

Following gene: 84625894

Centisome position: 97.01

GC content: 64.58

Gene sequence:

>2016_bases
GTGAAGTGCCTGTTGAGGGTTCTCGTGCTGGCAACGGTGTTGCTCGGCACCGGATGCGCCAGCCTGTCGCAAACCGAACG
CAACCGTGCTGCCGGCGTCGCCGCTGCGGCACGCAGTACCGTGGTGAATTGCACCCAGGCCAATCGTTGCGCGCAACCTT
CGCCGCTGCGCGCGCTGGGCGGCGAGGCGATCACCGCCTCCACACCGGCGGCGCCGCGGCACTACGCCACCATCGTCGAC
CACGGCGAAGAATCGCTGGTGGCTCGGCTCAATCTGATCCGCAGCGCTACCCGCAGCATCGACCTGCAGACCTATATCTT
CGACAAGGACGACAGCGCGCGCATGATCATGGACGCGCTGATGGACGCCGCGCAACGCGGCGTCAAGGTGCGCATCCTGA
TCGATCAGCTGTCGGCGATCGCCGATCTGCAGATTCTCGGTGCGCTGGCCAGCAGCCACGAAAACCTGCAGCTGCGCATC
TACAACCCCACCTTCGGCAAGGTCAAACTCAACTACTTCGACTATGCCGGCAGTGTGCTGTGCTGCTTCCGTCGCTTCAA
TCAGCGCATGCACAACAAGCTGTTGGTGGTGGACGACGTGCTCGGTGTGGTCGGCGGGCGCAATTACCAGGACGACTATT
ACGAGTGGGACAGCGAGTACAACTTTCGCGACCGCGACGTGATTCTGGCCGGTCCGGAAGTTCGTGCGATGGCCGCTAAT
TTCGATGCGTTCTGGCGTGCCCGGCGCAGTGTGCCGGCCGAGCGTTTGAACGATGTCGGGCGCGTGCTGCTGGAGCAGGG
CGTACCGCAGATGCCGCCAGCGAACTTCCGCCGGCCCGACCGGGTGGCGCGTGTGGATCGCGAAGCGCGCGATCCGCAGT
TCGTACGCGATGCCTTCGTGACCCCGGCCATGCCGGTGCAGCGTGTGCTGTATGTGGCCGATCTGCCGCAAAAGCACCGC
AAGGAACATGCTGCCAAGGCGGTTTCCACGGCGCCGGAACTGGATGGCCTGATTGCCGGCGCGCAGCAGGAAGTGCTGCT
GCAGACGCCGTATCTGGTGTTGTCCGACGCGGCGCAGGCGATCTTTCGCACGCTGCGCACGCACCCGCAGCCGCCGCGCA
TCGTGGTGTCGACCAATAGCCTGGCCGCCACCGACAATCCCATCGTGTATGCGCTGTCGTACAAGTTCAAACGCCGCAAC
ATGCGCGAGCTGGGCTTCAACATCTACGAGTTCAAGCCGTTCCCGCTCGATGTTCCGGTGGATTACGCCAACCTGGTGCC
GGATACACTCAACCCTGCTTCCGACATCAACGAAGACAGCCGCACCAATCGCCTGATCGGCGGCAGTGCGGCCGGCAATG
CGATGCGCGGCAGCAGCGGTGCAGACGGGAACACAAGCGCACGTGCTGGCAGCGTGCTACGCGGCAGCGGTGGCCGCGCG
CCGGGCGGTAGCGAGGTTGATCGGCGCGTGCTGCGTACCGAAACGAGACCCTCGTTCCTGGGCACGCGTGCGGTCAACAA
GCCGCTGCCGGTGACCCGCGCCGGTGCGCGCATGGGCTTGCATGCCAAGTCGCTGGTGGTGGATCGCCGCATCGGCGTGA
TCGGCACGCACAACTTCGACCCGCGCAGCGAGAACTACAACACCGAAGCGGCCGTGGTGATCGACGACGCGCGCTTTGCG
CAGGCGCTGGCCGCCAGCATCGAACGCGATATGTCGCCGGAAAACGCCTGGACGGTGGCCCCGCGCGAAAAGCCGCCGAT
GTTGAGCGGATTGAACTACAGCGTGGGTAAAGTTTCCGAAGCCTTGCCGGTGCTGGACTTCTGGCCGTGGCGCTACGCCA
CCAATTACGAGTTCCAGCCCGGCCCGGATTGCTTGTTCCCGCTCAAGCGCCAGGATACGCAGTTCCGTAAGTGCTACGTC
GCGGTGGGCGACTTCCCGGAGGTCAATGTCGGCCCGAAGTGGCTTTTGGTACGCATGCTCACCGCCTTCGGCGCCGGGCT
GGTGCCGATTCTTTGA

Upstream 100 bases:

>100_bases
CGGTCCTGCGTGGACGTTACGGAATGAATGCGTGGCAGATGGCACTGGGCGACGGGGTGACGTTCATTCTGCGTGGGCGC
TTGCAGGAGGCGCGGCACCC

Downstream 100 bases:

>100_bases
TTTGCTGACGTGTTGCACTGATGAAGATGGATTGATGCGCGATGTTGCGCTGTGTTGTCGGTCGATTGCCATAGATGTGC
GCGGTTTGCTAAGAATCGAC

Product: cardiolipin synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 671

Protein sequence:

>671_residues
MKCLLRVLVLATVLLGTGCASLSQTERNRAAGVAAAARSTVVNCTQANRCAQPSPLRALGGEAITASTPAAPRHYATIVD
HGEESLVARLNLIRSATRSIDLQTYIFDKDDSARMIMDALMDAAQRGVKVRILIDQLSAIADLQILGALASSHENLQLRI
YNPTFGKVKLNYFDYAGSVLCCFRRFNQRMHNKLLVVDDVLGVVGGRNYQDDYYEWDSEYNFRDRDVILAGPEVRAMAAN
FDAFWRARRSVPAERLNDVGRVLLEQGVPQMPPANFRRPDRVARVDREARDPQFVRDAFVTPAMPVQRVLYVADLPQKHR
KEHAAKAVSTAPELDGLIAGAQQEVLLQTPYLVLSDAAQAIFRTLRTHPQPPRIVVSTNSLAATDNPIVYALSYKFKRRN
MRELGFNIYEFKPFPLDVPVDYANLVPDTLNPASDINEDSRTNRLIGGSAAGNAMRGSSGADGNTSARAGSVLRGSGGRA
PGGSEVDRRVLRTETRPSFLGTRAVNKPLPVTRAGARMGLHAKSLVVDRRIGVIGTHNFDPRSENYNTEAAVVIDDARFA
QALAASIERDMSPENAWTVAPREKPPMLSGLNYSVGKVSEALPVLDFWPWRYATNYEFQPGPDCLFPLKRQDTQFRKCYV
AVGDFPEVNVGPKWLLVRMLTAFGAGLVPIL

Sequences:

>Translated_671_residues
MKCLLRVLVLATVLLGTGCASLSQTERNRAAGVAAAARSTVVNCTQANRCAQPSPLRALGGEAITASTPAAPRHYATIVD
HGEESLVARLNLIRSATRSIDLQTYIFDKDDSARMIMDALMDAAQRGVKVRILIDQLSAIADLQILGALASSHENLQLRI
YNPTFGKVKLNYFDYAGSVLCCFRRFNQRMHNKLLVVDDVLGVVGGRNYQDDYYEWDSEYNFRDRDVILAGPEVRAMAAN
FDAFWRARRSVPAERLNDVGRVLLEQGVPQMPPANFRRPDRVARVDREARDPQFVRDAFVTPAMPVQRVLYVADLPQKHR
KEHAAKAVSTAPELDGLIAGAQQEVLLQTPYLVLSDAAQAIFRTLRTHPQPPRIVVSTNSLAATDNPIVYALSYKFKRRN
MRELGFNIYEFKPFPLDVPVDYANLVPDTLNPASDINEDSRTNRLIGGSAAGNAMRGSSGADGNTSARAGSVLRGSGGRA
PGGSEVDRRVLRTETRPSFLGTRAVNKPLPVTRAGARMGLHAKSLVVDRRIGVIGTHNFDPRSENYNTEAAVVIDDARFA
QALAASIERDMSPENAWTVAPREKPPMLSGLNYSVGKVSEALPVLDFWPWRYATNYEFQPGPDCLFPLKRQDTQFRKCYV
AVGDFPEVNVGPKWLLVRMLTAFGAGLVPIL
>Mature_671_residues
MKCLLRVLVLATVLLGTGCASLSQTERNRAAGVAAAARSTVVNCTQANRCAQPSPLRALGGEAITASTPAAPRHYATIVD
HGEESLVARLNLIRSATRSIDLQTYIFDKDDSARMIMDALMDAAQRGVKVRILIDQLSAIADLQILGALASSHENLQLRI
YNPTFGKVKLNYFDYAGSVLCCFRRFNQRMHNKLLVVDDVLGVVGGRNYQDDYYEWDSEYNFRDRDVILAGPEVRAMAAN
FDAFWRARRSVPAERLNDVGRVLLEQGVPQMPPANFRRPDRVARVDREARDPQFVRDAFVTPAMPVQRVLYVADLPQKHR
KEHAAKAVSTAPELDGLIAGAQQEVLLQTPYLVLSDAAQAIFRTLRTHPQPPRIVVSTNSLAATDNPIVYALSYKFKRRN
MRELGFNIYEFKPFPLDVPVDYANLVPDTLNPASDINEDSRTNRLIGGSAAGNAMRGSSGADGNTSARAGSVLRGSGGRA
PGGSEVDRRVLRTETRPSFLGTRAVNKPLPVTRAGARMGLHAKSLVVDRRIGVIGTHNFDPRSENYNTEAAVVIDDARFA
QALAASIERDMSPENAWTVAPREKPPMLSGLNYSVGKVSEALPVLDFWPWRYATNYEFQPGPDCLFPLKRQDTQFRKCYV
AVGDFPEVNVGPKWLLVRMLTAFGAGLVPIL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=333, Percent_Identity=30.9309309309309, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 73975; Mature: 73975

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCLLRVLVLATVLLGTGCASLSQTERNRAAGVAAAARSTVVNCTQANRCAQPSPLRALG
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECHHCCCCCCCCCHHHHC
GEAITASTPAAPRHYATIVDHGEESLVARLNLIRSATRSIDLQTYIFDKDDSARMIMDAL
CCEEECCCCCCCCCEEHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH
MDAAQRGVKVRILIDQLSAIADLQILGALASSHENLQLRIYNPTFGKVKLNYFDYAGSVL
HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHHHH
CCFRRFNQRMHNKLLVVDDVLGVVGGRNYQDDYYEWDSEYNFRDRDVILAGPEVRAMAAN
HHHHHHHHHHHCCEEEEHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEECCCCEEEHHC
FDAFWRARRSVPAERLNDVGRVLLEQGVPQMPPANFRRPDRVARVDREARDPQFVRDAFV
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHC
TPAMPVQRVLYVADLPQKHRKEHAAKAVSTAPELDGLIAGAQQEVLLQTPYLVLSDAAQA
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHH
IFRTLRTHPQPPRIVVSTNSLAATDNPIVYALSYKFKRRNMRELGFNIYEFKPFPLDVPV
HHHHHHCCCCCCEEEEECCCEEECCCCEEEEEEEHHHHCCHHHHCCEEEEECCCCCCCCC
DYANLVPDTLNPASDINEDSRTNRLIGGSAAGNAMRGSSGADGNTSARAGSVLRGSGGRA
CHHHCCCCCCCCHHCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCHHCCCEEECCCCCC
PGGSEVDRRVLRTETRPSFLGTRAVNKPLPVTRAGARMGLHAKSLVVDRRIGVIGTHNFD
CCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCCC
PRSENYNTEAAVVIDDARFAQALAASIERDMSPENAWTVAPREKPPMLSGLNYSVGKVSE
CCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
ALPVLDFWPWRYATNYEFQPGPDCLFPLKRQDTQFRKCYVAVGDFPEVNVGPKWLLVRML
HCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHH
TAFGAGLVPIL
HHHCCCCCCCC
>Mature Secondary Structure
MKCLLRVLVLATVLLGTGCASLSQTERNRAAGVAAAARSTVVNCTQANRCAQPSPLRALG
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECHHCCCCCCCCCHHHHC
GEAITASTPAAPRHYATIVDHGEESLVARLNLIRSATRSIDLQTYIFDKDDSARMIMDAL
CCEEECCCCCCCCCEEHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH
MDAAQRGVKVRILIDQLSAIADLQILGALASSHENLQLRIYNPTFGKVKLNYFDYAGSVL
HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHHHH
CCFRRFNQRMHNKLLVVDDVLGVVGGRNYQDDYYEWDSEYNFRDRDVILAGPEVRAMAAN
HHHHHHHHHHHCCEEEEHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEECCCCEEEHHC
FDAFWRARRSVPAERLNDVGRVLLEQGVPQMPPANFRRPDRVARVDREARDPQFVRDAFV
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHC
TPAMPVQRVLYVADLPQKHRKEHAAKAVSTAPELDGLIAGAQQEVLLQTPYLVLSDAAQA
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHH
IFRTLRTHPQPPRIVVSTNSLAATDNPIVYALSYKFKRRNMRELGFNIYEFKPFPLDVPV
HHHHHHCCCCCCEEEEECCCEEECCCCEEEEEEEHHHHCCHHHHCCEEEEECCCCCCCCC
DYANLVPDTLNPASDINEDSRTNRLIGGSAAGNAMRGSSGADGNTSARAGSVLRGSGGRA
CHHHCCCCCCCCHHCCCCCHHHCEEECCCCCCCCCCCCCCCCCCCCHHCCCEEECCCCCC
PGGSEVDRRVLRTETRPSFLGTRAVNKPLPVTRAGARMGLHAKSLVVDRRIGVIGTHNFD
CCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCCC
PRSENYNTEAAVVIDDARFAQALAASIERDMSPENAWTVAPREKPPMLSGLNYSVGKVSE
CCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
ALPVLDFWPWRYATNYEFQPGPDCLFPLKRQDTQFRKCYVAVGDFPEVNVGPKWLLVRML
HCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHH
TAFGAGLVPIL
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]