Click here to switch to the map view.

The map label for this gene is speD [H]

Identifier: 84625589

GI number: 84625589

Start: 4430884

End: 4431678

Strand: Reverse

Name: speD [H]

Synonym: XOO_3932

Alternate gene names: 84625589

Gene position: 4431678-4430884 (Counterclockwise)

Preceding gene: 84625591

Following gene: 84625588

Centisome position: 89.71

GC content: 54.21

Gene sequence:

>795_bases
GTGGTCAAGCCGTTGCCTCGCCTGAGGCTACAGGGGTTCAACAACCTCACCAAGGCGTTGAGCTTCAACATCTACGACGT
CTGTTATGCGCGTACCGAAGAGGAGCGTCAGCGCTACATCGAGTATATCGATGAGCAGTACGACGCTGATCGTCTGACGC
AGATCCTGACCGATGTGGCCGAGATCATTGGCGCCAACATCCTCAATATCGCACGTCAGGACTACGATCCGCAGGGTGCA
TCGGTGACGATTCTGATCTCCGAAGAACCGGTGATCGACAAGAAGCAGGCCGGCAGGGAGCTGATCTCCGACGCCGTGGT
TGCTCACATGGACAAGAGTCATATCACTGTCCATACATATCCGGAAACGCACCCGCAGGAAGGCATCGCCACGTTCCGTG
CCGACATCGATGTGGCAACCTGTGGCGTGATCTCGCCGCTGAAGGCGCTGAACTATCTGATCGAGACGTTGGAATCGGAC
ATCGTGATCATGGACTACCGTGTCCGTGGCTTTACCCGCGATGTGAAGGGGAAGAAGCACTACATCGACCACAAGATCAA
TTCGATCCAGCACTTCCTCGCCAAGAACGTGAAGTCGCGCTACGAGATGATCGATGTCAACGTCTATCAGGAAAATATCT
TCCACACGAAGATGCACCTGAAGGACTTCGACCTCGATCAGTACCTGTTCGAAGAGCGCGCCAAGAACCTCTCGTTCAAG
GAGCGCATGAAGATCGAAACGCTGCTCAAGCGTGAGATCGAAGAACTGTTTCACGGGCGTAACCTGAGCGAATAA

Upstream 100 bases:

>100_bases
GAGTCATGCAAGGTAAACCACTCTTAACATCGGCATTTCGTTGCTGCGATCTTTGGCTCATAATTAACTCCTTTCCCGCT
TTCCATAAGGACAGACCGAC

Downstream 100 bases:

>100_bases
GTTCAGGACCAGCCCGTTGCGTGCTTGCTTGCAAGCGCGCCAACGCCACAAGGCGGGACGGCCCGCCACGCGATGACTTC
GCGTTCCACAGCCGACGGCG

Product: S-adenosylmethionine decarboxylase

Products: NA

Alternate protein names: AdoMetDC; SAMDC [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MVKPLPRLRLQGFNNLTKALSFNIYDVCYARTEEERQRYIEYIDEQYDADRLTQILTDVAEIIGANILNIARQDYDPQGA
SVTILISEEPVIDKKQAGRELISDAVVAHMDKSHITVHTYPETHPQEGIATFRADIDVATCGVISPLKALNYLIETLESD
IVIMDYRVRGFTRDVKGKKHYIDHKINSIQHFLAKNVKSRYEMIDVNVYQENIFHTKMHLKDFDLDQYLFEERAKNLSFK
ERMKIETLLKREIEELFHGRNLSE

Sequences:

>Translated_264_residues
MVKPLPRLRLQGFNNLTKALSFNIYDVCYARTEEERQRYIEYIDEQYDADRLTQILTDVAEIIGANILNIARQDYDPQGA
SVTILISEEPVIDKKQAGRELISDAVVAHMDKSHITVHTYPETHPQEGIATFRADIDVATCGVISPLKALNYLIETLESD
IVIMDYRVRGFTRDVKGKKHYIDHKINSIQHFLAKNVKSRYEMIDVNVYQENIFHTKMHLKDFDLDQYLFEERAKNLSFK
ERMKIETLLKREIEELFHGRNLSE
>Mature_264_residues
MVKPLPRLRLQGFNNLTKALSFNIYDVCYARTEEERQRYIEYIDEQYDADRLTQILTDVAEIIGANILNIARQDYDPQGA
SVTILISEEPVIDKKQAGRELISDAVVAHMDKSHITVHTYPETHPQEGIATFRADIDVATCGVISPLKALNYLIETLESD
IVIMDYRVRGFTRDVKGKKHYIDHKINSIQHFLAKNVKSRYEMIDVNVYQENIFHTKMHLKDFDLDQYLFEERAKNLSFK
ERMKIETLLKREIEELFHGRNLSE

Specific function: Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine [H]

COG id: COG1586

COG function: function code E; S-adenosylmethionine decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786311, Length=262, Percent_Identity=64.5038167938931, Blast_Score=358, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003826
- InterPro:   IPR009165
- InterPro:   IPR016067 [H]

Pfam domain/function: PF02675 AdoMet_dc [H]

EC number: =4.1.1.50 [H]

Molecular weight: Translated: 30824; Mature: 30824

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPLPRLRLQGFNNLTKALSFNIYDVCYARTEEERQRYIEYIDEQYDADRLTQILTDVA
CCCCCCHHHHCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
EIIGANILNIARQDYDPQGASVTILISEEPVIDKKQAGRELISDAVVAHMDKSHITVHTY
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
PETHPQEGIATFRADIDVATCGVISPLKALNYLIETLESDIVIMDYRVRGFTRDVKGKKH
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCCCCHH
YIDHKINSIQHFLAKNVKSRYEMIDVNVYQENIFHTKMHLKDFDLDQYLFEERAKNLSFK
HHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHH
ERMKIETLLKREIEELFHGRNLSE
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVKPLPRLRLQGFNNLTKALSFNIYDVCYARTEEERQRYIEYIDEQYDADRLTQILTDVA
CCCCCCHHHHCCCHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
EIIGANILNIARQDYDPQGASVTILISEEPVIDKKQAGRELISDAVVAHMDKSHITVHTY
HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC
PETHPQEGIATFRADIDVATCGVISPLKALNYLIETLESDIVIMDYRVRGFTRDVKGKKH
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCCCCHH
YIDHKINSIQHFLAKNVKSRYEMIDVNVYQENIFHTKMHLKDFDLDQYLFEERAKNLSFK
HHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHH
ERMKIETLLKREIEELFHGRNLSE
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA