| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84625128
Identifier: 84625128
GI number: 84625128
Start: 3930728
End: 3931552
Strand: Reverse
Name: 84625128
Synonym: XOO_3471
Alternate gene names: NA
Gene position: 3931552-3930728 (Counterclockwise)
Preceding gene: 84625129
Following gene: 84625127
Centisome position: 79.58
GC content: 64.48
Gene sequence:
>825_bases ATGAGCATCGGTCTATTCGAAAGCACCGATGTGTTCGATGCTGCTCGCCTGTGTCTTGACCAGGCCGACCCGCTGCAGAA AGTCGCGTTGACCCAACACTACGCAGCAGCCTTTCGCGCAGGCCGTCTTGCGATCAATCCGACAGCGCCTGCGCCGGATC CGATTCGCATGCCGGGCCGTCCGCCGACGCCGCCGCTGGTGCATCCGCGCGAGTTGCCACGCCGCGGATTGGGTACGCCA GAAGGGCGCGCCGCATTTATCCATGCCATTGCGCATATCGAACTCAATGCCATCGATCTGGCCTGGGATGCGGTGTATCG CTTCCGCGGTCTGCCGCAAGCGTTCTACGCCGATTGGGTGGCGGTGGCCGATGACGAATCGCGGCATTTCATGCTGTTAC GCGCGCGCTTGCAGGCGCACGACCGCGACTACGGCGACTTCGCCGCACATAACGGGCTGTGGGAAATGTGCGAGACAACC GCGCACGACGGCCTGGCCCGCATGGCCCTGGTGCCGCGCGTGCTCGAAGCGCGCGGCCTGGATGTGACGCCGGCGATGAT CGTCAAACTACGTTTGCTCGGCGACGCAGCCACTGCCGAGGTGCTCGAAACCATCCTGCGCGAAGAAGTGGCGCACGTCG CCGCGGGTTCGCGCTGGTACCGCTGGTATTGCGAGCAGGCCGGCGTCGAGCCACGCGCACGTTTCAAGGCGTTGCTGCGC CAATACGCTGGCGGCTATCTGCATGGGCCGTTCAATCTGCAAGCGCGCCTGCTTGCCGGTTTCGACGAAGACGAGCTGGC AGATCTGGTGGAGCAGGCTGGCTGA
Upstream 100 bases:
>100_bases GGCTGGCGCTGCCGGCTGGCTGTGCAAGGCAAAACGCGTGTAAGTGCATGCCGGTGCGCTGCGTTTCTGCAGCGGGCCAC CATCTGCTGTGGCCGACAGC
Downstream 100 bases:
>100_bases GCGTGGCGGCGGTGTTTGCGTAGCGAATAAGAGCGGCTCACAAAACGAAGCGAGCAGCTGTCAGGTGGGCGCGGACGGCG CGCTCAGAACCGCAGTGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSIGLFESTDVFDAARLCLDQADPLQKVALTQHYAAAFRAGRLAINPTAPAPDPIRMPGRPPTPPLVHPRELPRRGLGTP EGRAAFIHAIAHIELNAIDLAWDAVYRFRGLPQAFYADWVAVADDESRHFMLLRARLQAHDRDYGDFAAHNGLWEMCETT AHDGLARMALVPRVLEARGLDVTPAMIVKLRLLGDAATAEVLETILREEVAHVAAGSRWYRWYCEQAGVEPRARFKALLR QYAGGYLHGPFNLQARLLAGFDEDELADLVEQAG
Sequences:
>Translated_274_residues MSIGLFESTDVFDAARLCLDQADPLQKVALTQHYAAAFRAGRLAINPTAPAPDPIRMPGRPPTPPLVHPRELPRRGLGTP EGRAAFIHAIAHIELNAIDLAWDAVYRFRGLPQAFYADWVAVADDESRHFMLLRARLQAHDRDYGDFAAHNGLWEMCETT AHDGLARMALVPRVLEARGLDVTPAMIVKLRLLGDAATAEVLETILREEVAHVAAGSRWYRWYCEQAGVEPRARFKALLR QYAGGYLHGPFNLQARLLAGFDEDELADLVEQAG >Mature_273_residues SIGLFESTDVFDAARLCLDQADPLQKVALTQHYAAAFRAGRLAINPTAPAPDPIRMPGRPPTPPLVHPRELPRRGLGTPE GRAAFIHAIAHIELNAIDLAWDAVYRFRGLPQAFYADWVAVADDESRHFMLLRARLQAHDRDYGDFAAHNGLWEMCETTA HDGLARMALVPRVLEARGLDVTPAMIVKLRLLGDAATAEVLETILREEVAHVAAGSRWYRWYCEQAGVEPRARFKALLRQ YAGGYLHGPFNLQARLLAGFDEDELADLVEQAG
Specific function: Unknown
COG id: COG2833
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007402 - InterPro: IPR009078 - InterPro: IPR011197 [H]
Pfam domain/function: PF04305 DUF455 [H]
EC number: NA
Molecular weight: Translated: 30408; Mature: 30277
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIGLFESTDVFDAARLCLDQADPLQKVALTQHYAAAFRAGRLAINPTAPAPDPIRMPGR CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC PPTPPLVHPRELPRRGLGTPEGRAAFIHAIAHIELNAIDLAWDAVYRFRGLPQAFYADWV CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHCCCHHHHHCCC AVADDESRHFMLLRARLQAHDRDYGDFAAHNGLWEMCETTAHDGLARMALVPRVLEARGL EEECCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC DVTPAMIVKLRLLGDAATAEVLETILREEVAHVAAGSRWYRWYCEQAGVEPRARFKALLR CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH QYAGGYLHGPFNLQARLLAGFDEDELADLVEQAG HHCCCEEECCCCCHHHEECCCCHHHHHHHHHHCC >Mature Secondary Structure SIGLFESTDVFDAARLCLDQADPLQKVALTQHYAAAFRAGRLAINPTAPAPDPIRMPGR CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC PPTPPLVHPRELPRRGLGTPEGRAAFIHAIAHIELNAIDLAWDAVYRFRGLPQAFYADWV CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHCCCHHHHHCCC AVADDESRHFMLLRARLQAHDRDYGDFAAHNGLWEMCETTAHDGLARMALVPRVLEARGL EEECCCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC DVTPAMIVKLRLLGDAATAEVLETILREEVAHVAAGSRWYRWYCEQAGVEPRARFKALLR CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHH QYAGGYLHGPFNLQARLLAGFDEDELADLVEQAG HHCCCEEECCCCCHHHEECCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]