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The map label for this gene is rbn [C]

Identifier: 84625074

GI number: 84625074

Start: 3878060

End: 3879337

Strand: Reverse

Name: rbn [C]

Synonym: XOO_3417

Alternate gene names: 84625074

Gene position: 3879337-3878060 (Counterclockwise)

Preceding gene: 84625077

Following gene: 84625073

Centisome position: 78.53

GC content: 64.55

Gene sequence:

>1278_bases
ATGTCGCGTGTGAAAAAACTCCACCAATGGAAGGAACGTCTGCGCGACCGCGCGCGGACAGTGAGCTTCGGGCGCTTTCT
GTGGCGCCGCTTTCTCGACGACCGGCTGTTCCAGGCGGCCGCCTCGCTCGCATACACCACCGTGTTCGCACTGGTGCCAT
TGGCGATCGTGGTGTTCGGCGTGTTGTCGGCATTTCCGGCCTTCAACGAGTGGAAGGACGCACTGACCGACTTCATCTTC
ACTAACTTCGTGCCCGGCGCCGCACGCTCGGTGCAGAACTATCTCAACCGCTCGCTGGAAGACCTGGGCAAGTTCACCGT
GGCCGGTATGGTCGCGCTGGTGGCCTCGTTGCTGATCACCCTGCACAGCATCGAGCAGACCTTCAACAGCATCTGGCGGG
TCGCCGCCGCGCGCCCCAAGGTGACGCGTTTCCTGATCTATTGGACGGTGCTGACGCTGGGCACGATGCTGGCCGCCGCC
TCCATGGCGATGGCGGCGTACGTGTTCGCGCTGCCGTTGTTCCGCACCACCGAAGGCCAGTGGCTGGCGGAATTTGCCTG
GCGGTTGGCACCGATGGCGGTGGAGTTCATCTGCATCGTGCTGATCTACCGCGTGGTGCCGCAGCACGTGGTGCGGCTGC
GGCATGCGCTGCCGGGCGCGCTGCTGGCGGTGATCCTGATGGAAATCGTCAAGTGGGGTTTCGGCGTCTATCTCGGTAAT
TTCCAGACGTATCAACGCATTTACGGCGCATTGTCGGCGCTGCCGATCCTGCTGTTGTGGATCTACCTGAGCTGGGTGTC
GGTGCTGCTGGGCGCCTCGCTGGCCTCCTCGATGGCGGCCTTCCGCTACCAGCCCGAGGCCATGCGGCTGCCGACGGGCT
TTGAGATCTATGGCCTGCTGCGTCTGCTTGGCCGGTTCCGCCAGGCGCGCATCCATGGTGAAGGCCTGGACGAAGACCGC
ATTCTGGCGCTGGAACCCATGCTCACCGATACGCTGATGCAGGAGCTGCTGTGCGAGCTCAAGCGCATGCGCCTGCTGCG
TCGCGACGAGCGCGGCCAATGGCTGTTGGCGCGCGATCTGGACCTGGTGCCCCTGGCCGAGCTCTACGAAAACTGCCAAC
TTCGCGTGCCGATCGAAGACCGCCCGTTGCCGTGTCGCGACGATGCCTACGGCCAGGCCGCCGCCGCCGCGCTGGAACAG
CTACGCCAACCGTTGCGCAGCGTGCTGGCGCAGCCGGTCGGCGACCTTTACACCCACCTTCCCGGAGATCCTCCATGA

Upstream 100 bases:

>100_bases
CGCCTGTGTGAGTTGCTGCAGTATCGGCCAAGCCAGCCTGCTGCTGCACGCCGCAGGTGCGACAAGGCCGCGATGACGGC
GCATCGGGTACCCTTGCGCG

Downstream 100 bases:

>100_bases
CTGTGCGTCTTGTCCGCGGCGCCTGCGCGCTGCTGTTGCCATTGGTGTTGCTGGCCGCCTGCAAGCCCGCCAGCGAGGGC
ACTCCCGCTGCCGGCAGCGG

Product: ribonuclease BN/unknown domain fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MSRVKKLHQWKERLRDRARTVSFGRFLWRRFLDDRLFQAAASLAYTTVFALVPLAIVVFGVLSAFPAFNEWKDALTDFIF
TNFVPGAARSVQNYLNRSLEDLGKFTVAGMVALVASLLITLHSIEQTFNSIWRVAAARPKVTRFLIYWTVLTLGTMLAAA
SMAMAAYVFALPLFRTTEGQWLAEFAWRLAPMAVEFICIVLIYRVVPQHVVRLRHALPGALLAVILMEIVKWGFGVYLGN
FQTYQRIYGALSALPILLLWIYLSWVSVLLGASLASSMAAFRYQPEAMRLPTGFEIYGLLRLLGRFRQARIHGEGLDEDR
ILALEPMLTDTLMQELLCELKRMRLLRRDERGQWLLARDLDLVPLAELYENCQLRVPIEDRPLPCRDDAYGQAAAAALEQ
LRQPLRSVLAQPVGDLYTHLPGDPP

Sequences:

>Translated_425_residues
MSRVKKLHQWKERLRDRARTVSFGRFLWRRFLDDRLFQAAASLAYTTVFALVPLAIVVFGVLSAFPAFNEWKDALTDFIF
TNFVPGAARSVQNYLNRSLEDLGKFTVAGMVALVASLLITLHSIEQTFNSIWRVAAARPKVTRFLIYWTVLTLGTMLAAA
SMAMAAYVFALPLFRTTEGQWLAEFAWRLAPMAVEFICIVLIYRVVPQHVVRLRHALPGALLAVILMEIVKWGFGVYLGN
FQTYQRIYGALSALPILLLWIYLSWVSVLLGASLASSMAAFRYQPEAMRLPTGFEIYGLLRLLGRFRQARIHGEGLDEDR
ILALEPMLTDTLMQELLCELKRMRLLRRDERGQWLLARDLDLVPLAELYENCQLRVPIEDRPLPCRDDAYGQAAAAALEQ
LRQPLRSVLAQPVGDLYTHLPGDPP
>Mature_424_residues
SRVKKLHQWKERLRDRARTVSFGRFLWRRFLDDRLFQAAASLAYTTVFALVPLAIVVFGVLSAFPAFNEWKDALTDFIFT
NFVPGAARSVQNYLNRSLEDLGKFTVAGMVALVASLLITLHSIEQTFNSIWRVAAARPKVTRFLIYWTVLTLGTMLAAAS
MAMAAYVFALPLFRTTEGQWLAEFAWRLAPMAVEFICIVLIYRVVPQHVVRLRHALPGALLAVILMEIVKWGFGVYLGNF
QTYQRIYGALSALPILLLWIYLSWVSVLLGASLASSMAAFRYQPEAMRLPTGFEIYGLLRLLGRFRQARIHGEGLDEDRI
LALEPMLTDTLMQELLCELKRMRLLRRDERGQWLLARDLDLVPLAELYENCQLRVPIEDRPLPCRDDAYGQAAAAALEQL
RQPLRSVLAQPVGDLYTHLPGDPP

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=278, Percent_Identity=35.9712230215827, Blast_Score=189, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48304; Mature: 48172

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCC
>Mature Secondary Structure 
SRVKKLHQWKERLRDRARTVSFGRFLWRRFLDDRLFQAAASLAYTTVFALVPLAIVVFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA