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The map label for this gene is xynC [H]

Identifier: 84625077

GI number: 84625077

Start: 3880598

End: 3881818

Strand: Reverse

Name: xynC [H]

Synonym: XOO_3420

Alternate gene names: 84625077

Gene position: 3881818-3880598 (Counterclockwise)

Preceding gene: 84625080

Following gene: 84625074

Centisome position: 78.58

GC content: 62.41

Gene sequence:

>1221_bases
ATGAAGAAATCCTTGTCGATGTTGCGCGGACTGACCTGCGCGATGGCCGTGCTGCTGGCGGGCCACGCCTCCGCGCAGAC
AGTGACGATCACGCCCACGCAGACCTATCAGACGGTGCGCGGGTTCGGCGGCATGAATGGCGCAGGCTGGATCAACGATC
TGACGCCAGCGCAGGTGGATCTGGCCTATGGCAGCGGCAACGGGCAGATCGGGTTGTCGATCCTGCGCGTGCGTATCGAC
CCATCCAGCTCCGGCTGGGCAATCCAGGTGCCCACGGCGACACGCGTGCGTGCGTTGGGCGGGCTGGTGTTCGCAAGCCC
ATGGTCGCCGCCGGCCTACATGAAGTCCAATAACAGCTTGACCAATGGCGGCAAACTGCTGCCGAACTACTACGGCGCCT
ACACCAAGTACCTGCTGGATTTCGCCAATTACATGTCGGGCAAGGGCGCGCCGCTGTACGCGATTTCCCTGCAAAACGAG
CCGGATTGGCATCCCAATTACGAGTCGGCTGGCTGGAACGGCAGCGATTTCGTCAACTATCTCGTGAGCGAAGGCAGTAA
GTTCGGCGGCCTCAAGGTCATCGTCGGCGAGTCGGTGGGGTTCAACTTCTCCATCACCGACCCGGTCCTCAGCAACGCCA
CTGCCAATCAGGCCACCTCCATCGTGGCCGGCCATCTGTATGGCGCGGTGCCGCGCGACTATGCCTTGGCGCGCAGCAAG
GGCAAGCAGGTGTGGATGACCGAGCATTACACCGACAGCACCGATGGCAACGCGTGGCCGTCGGCATTGGGCGTGGCCAG
CGAGTTGCACGCCAGCATGGTGGCCAATTTCAATGCCTATATCTGGTGGTACATCCGGCGCAGCTATGGGTTGATCAGCG
AGAACGGCGCAGTCAGCAAACGCGGTTACGCGATGTCGCAGTTCGCACGCTTCGTGCGGCCCGGCTCGGTGCGCATCGGC
GCCACCGAACACCCGTATTCCGATGTCTCTGTCACCGCCTACCGCACGCCGGACAACAAGCTGGTGCTGGTGGCGGTCAA
CACAGGCACCGGCCATCAGCGCCTGGATCTGACGCTACCGTCTGGCGCTGCCGCGCAGTTCGCCCGATACACCACATCGA
GCACGCTCAATGTCGGTTTTGGCGGTCACTACAGCGTGGTTAACGGCAAGACCTCGCTGTATGTCGATCCGCAGAGCGTG
ACCACACTGGTCGGCAACTGA

Upstream 100 bases:

>100_bases
CAATGATCCGTCACAGAAATTAAATTGCCATCTCCGCAGTCGATAGTCGGTGGGCCGTCGGTGCCGCGATGCCGGCGGCA
TCCCCTTTCCGGAGAAACCC

Downstream 100 bases:

>100_bases
GAGCGGCTACCAAACGTAGCGATGAGTCGTCAGGTGGGCGTGGACGGCGCGCAGGACCTATGCTGGACGCTTGGTACATG
CCACCCCTAGCGCCCGCCGC

Product: xylanase

Products: NA

Alternate protein names: Endoxylanase xynC; Glucuronoxylan xylanohydrolase [H]

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKKSLSMLRGLTCAMAVLLAGHASAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVDLAYGSGNGQIGLSILRVRID
PSSSGWAIQVPTATRVRALGGLVFASPWSPPAYMKSNNSLTNGGKLLPNYYGAYTKYLLDFANYMSGKGAPLYAISLQNE
PDWHPNYESAGWNGSDFVNYLVSEGSKFGGLKVIVGESVGFNFSITDPVLSNATANQATSIVAGHLYGAVPRDYALARSK
GKQVWMTEHYTDSTDGNAWPSALGVASELHASMVANFNAYIWWYIRRSYGLISENGAVSKRGYAMSQFARFVRPGSVRIG
ATEHPYSDVSVTAYRTPDNKLVLVAVNTGTGHQRLDLTLPSGAAAQFARYTTSSTLNVGFGGHYSVVNGKTSLYVDPQSV
TTLVGN

Sequences:

>Translated_406_residues
MKKSLSMLRGLTCAMAVLLAGHASAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVDLAYGSGNGQIGLSILRVRID
PSSSGWAIQVPTATRVRALGGLVFASPWSPPAYMKSNNSLTNGGKLLPNYYGAYTKYLLDFANYMSGKGAPLYAISLQNE
PDWHPNYESAGWNGSDFVNYLVSEGSKFGGLKVIVGESVGFNFSITDPVLSNATANQATSIVAGHLYGAVPRDYALARSK
GKQVWMTEHYTDSTDGNAWPSALGVASELHASMVANFNAYIWWYIRRSYGLISENGAVSKRGYAMSQFARFVRPGSVRIG
ATEHPYSDVSVTAYRTPDNKLVLVAVNTGTGHQRLDLTLPSGAAAQFARYTTSSTLNVGFGGHYSVVNGKTSLYVDPQSV
TTLVGN
>Mature_406_residues
MKKSLSMLRGLTCAMAVLLAGHASAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVDLAYGSGNGQIGLSILRVRID
PSSSGWAIQVPTATRVRALGGLVFASPWSPPAYMKSNNSLTNGGKLLPNYYGAYTKYLLDFANYMSGKGAPLYAISLQNE
PDWHPNYESAGWNGSDFVNYLVSEGSKFGGLKVIVGESVGFNFSITDPVLSNATANQATSIVAGHLYGAVPRDYALARSK
GKQVWMTEHYTDSTDGNAWPSALGVASELHASMVANFNAYIWWYIRRSYGLISENGAVSKRGYAMSQFARFVRPGSVRIG
ATEHPYSDVSVTAYRTPDNKLVLVAVNTGTGHQRLDLTLPSGAAAQFARYTTSSTLNVGFGGHYSVVNGKTSLYVDPQSV
TTLVGN

Specific function: Catalyzes the depolymerization of methylglucuronoxylan (MeGAXn). It cleaves the beta-1,4-xylosidic bond penultimate to that linking carbon one of the xylose residue substituted with alpha-1,2-linked 4-O-methyl-D-glucuronate (MeGA) [H]

COG id: COG5520

COG function: function code M; O-Glycosyl hydrolase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 30 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR001139
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02055 Glyco_hydro_30 [H]

EC number: =3.2.1.136 [H]

Molecular weight: Translated: 43453; Mature: 43453

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLSMLRGLTCAMAVLLAGHASAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVD
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEE
LAYGSGNGQIGLSILRVRIDPSSSGWAIQVPTATRVRALGGLVFASPWSPPAYMKSNNSL
EEEECCCCEEEEEEEEEEECCCCCCCEEECCCHHHHHHHCCEEEECCCCCCCEEECCCCC
TNGGKLLPNYYGAYTKYLLDFANYMSGKGAPLYAISLQNEPDWHPNYESAGWNGSDFVNY
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
LVSEGSKFGGLKVIVGESVGFNFSITDPVLSNATANQATSIVAGHLYGAVPRDYALARSK
HHHCCCCCCCEEEEEECCCCCEEEECCHHHCCCCCHHHHHHEEHHHHCCCCCHHHHHHCC
GKQVWMTEHYTDSTDGNAWPSALGVASELHASMVANFNAYIWWYIRRSYGLISENGAVSK
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEECCCCCCC
RGYAMSQFARFVRPGSVRIGATEHPYSDVSVTAYRTPDNKLVLVAVNTGTGHQRLDLTLP
CCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECC
SGAAAQFARYTTSSTLNVGFGGHYSVVNGKTSLYVDPQSVTTLVGN
CCHHHHHHHHCCCCEEEECCCCEEEEECCCEEEEECCHHHEEECCC
>Mature Secondary Structure
MKKSLSMLRGLTCAMAVLLAGHASAQTVTITPTQTYQTVRGFGGMNGAGWINDLTPAQVD
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEE
LAYGSGNGQIGLSILRVRIDPSSSGWAIQVPTATRVRALGGLVFASPWSPPAYMKSNNSL
EEEECCCCEEEEEEEEEEECCCCCCCEEECCCHHHHHHHCCEEEECCCCCCCEEECCCCC
TNGGKLLPNYYGAYTKYLLDFANYMSGKGAPLYAISLQNEPDWHPNYESAGWNGSDFVNY
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
LVSEGSKFGGLKVIVGESVGFNFSITDPVLSNATANQATSIVAGHLYGAVPRDYALARSK
HHHCCCCCCCEEEEEECCCCCEEEECCHHHCCCCCHHHHHHEEHHHHCCCCCHHHHHHCC
GKQVWMTEHYTDSTDGNAWPSALGVASELHASMVANFNAYIWWYIRRSYGLISENGAVSK
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEECCCCCCC
RGYAMSQFARFVRPGSVRIGATEHPYSDVSVTAYRTPDNKLVLVAVNTGTGHQRLDLTLP
CCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECC
SGAAAQFARYTTSSTLNVGFGGHYSVVNGKTSLYVDPQSVTTLVGN
CCHHHHHHHHCCCCEEEECCCCEEEEECCCEEEEECCHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA