| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is 84624874
Identifier: 84624874
GI number: 84624874
Start: 3648386
End: 3651226
Strand: Reverse
Name: 84624874
Synonym: XOO_3217
Alternate gene names: NA
Gene position: 3651226-3648386 (Counterclockwise)
Preceding gene: 84624875
Following gene: 84624873
Centisome position: 73.91
GC content: 66.35
Gene sequence:
>2841_bases GTGTTGGCGGCCCTGGTACTGATTGCCGTGCCTGTGGGTGTAGTGGTGGCGCTGGTGTGGATTGCCCGGTTGCGGCGGCG GGTGTCCTCGCTGGAGCAACGGCTTGCCCAGTGGCAGGCCGGCACTGCGGAGCGCGCGGATGCGCCAGCGTACGCGCAGG GCAGGACGTGGGAGCGGCCCGAGGTGGTGTCCGATCTCGACGCCGGGCTAGTTTCCCGTGCGGACGGCAATGTGCCAGTG TCCGGCACATCTGGCGCAGCTCAACGTGGCGAAAGCTGGCAGGTGGCTGCTGCTGCGGAGCAGAACGCGGTCGATGTGTC CGTGGTGCCGCCACCGTTGCCTGCGCAGACCCCTGCAACTGCGATAGCGCGCGATGGAACCGCGATGTCGGAAGTTCCCG GCCAGCACTCTCAGCCGGCGCAACCGCAACCAGCGCAACCGCAACCAGCGCAACCGCAACCTACACAGCCGCAGCCACCT CAACGACCTCAGATTCCGTCCGAGCCCTGCGTCATCGTGCGTGCAGCCAGCGCATTGAAGCGTTGGTTCACCGAAGGCAA TGTACCGGTCAAGGTCGGCATGCTGGTCCTGTTGGCAGGGGTGGCATCGCTGCTGAAGTACGCCAGCGACCAGGGCTGGA TGCGGATGCCGATCGAGCTGCGCTTGGCCGGCATCAGCGTTCTCGCATTGGTCGGTCTGGTGTTTGGTTGGAAGCAACGC GAGCAGCGACCGGGCTTTGCGTTGGCATTGCAGGGCGGCGCCATTGGCGGCTTGCTGTTGACGGTGTTCGCGGCCTTCAA GTTGTACGCGTTGCTGGATGCTGGACCTGCGCTGGGCATCAGCGTGGTGCTGATCGCGGGCATGTGCGTGTTGGCCGTGT TGCAGGATTCGCGCACGCTGGCGGTGCTGGGCGTGCTGGCCGGCTTCCTTGCGCCGATCGGGTTGTCCACCGGCAGCGGG AATCATGTCGGGCTGTTTACCTATTACGCGATACTCAACGCTGGCATCGTGGCGATTGCGTGGCTGCGTCCGTGGCGCGT GCTGAACCTGCTGGGGTTTGCGTTCACTTTCGGCATCGGCATTGTGTGGGGTGCGCTGCAATACACCCCGGCAAAATTCG CCACCACCGAGCCGTTCCTGTTGCTGTTCTTCGCCATGTACGTGGCGATCCCGGTATTGCATGCGCGCCGCGGCGACGGC AGTGCAGGCAAGGTCATCGATGGCAGCCTGTTGTTCGGGACACCGCTGGTGGCCTTCGCGTTGCAGGCAGGCCTGCTTGA GGGCGATCAGCTGCCGCTCGCGTTGTGCGCGGTGGTGGTGGCCGCGGTGTATGCAGGCCTGGCAAGCTGGTTGTTGCGCC GGGCTCCCACGCGCTTGCTGGGCCAGGCGCACGCGATGCTGGCGGTCGGCTTCGCCACCCTGGCGATTCCGCTGGCATTG TCGGCACGTGCCACTGCGAGCGTGTTCGCGCTGGAAGGCGTCGGCCTGTTGTGGCTGGGCTTACGCCAGCAACGGCGGAT CCCTCAGATCAGCGGCGTGGCGCTGCAGTTGCTCGCGGCGGTAGGTGTCGCCTTCGGTGTGGATGCCTGGCGCTACGACG CGGTAGCGGTGGCCAACGCGACCTGCATGAGCACGTTGCTGATCGCGCTTTCTGGCTGGGTGAGCGCCTGGTTCATGCGC GATGCAGGGCATCCACGGTGTGCGCTGGTGGCGTATCTGTGGGGGCTGGGCTGGTCGACGTTCTGCGGTGTGCACGAGAT CCTGCGCTTTGCCGATCTGTGCAGCGAACCAGATCTGCTGCTGGGCTTTGTCGCACTCAGCCTGTGGCTGGCTGCAGAAG TGCATCGCCGGCGTCCCGCAACGGCGTTGGTGTGGACGGTGATGTCGGGTCTGGTGCTGGCAGCGCCATTGGCACTGTGG CAGGGCCAAGCGCATACCCAGCCGTTCGCGCATTGGGGCGCGCTGGCGTGGGGTGTGTTTGCGGTGGCGGGCGCACGAGC GCTGTGGTGCCTGCGTACGCAGCAAGGCGCTGGCGCGATGGCGGCGCAGTTCATCTGGTGGCTGCTGTGGCCATTGGTGG TGGCGTTGGGTGCAGCCTGGTGGGCCGATGCGTTCTTGCTGGCGAATGGCTGGCGTTGTGCCTTGCTGGCGGCGCCTTGG CTGGTCGTGGCGAGCCTGGGATTATTGCGTTGGCCCTGGCTGGCATGGCCGCAGGGCGCCAGCTTCGATCCTGCACGCAA CGCGTTGCTGAGTTGCGTGTTCGCGGTGCTGGGCATCGGCTGGCTATTGGTGTTGCTGGACCCGGTGAGCGCGGCACCGT TGCCGTGGTTGCCGCTGCTGAATCCGGCCGAGCTGGCGCAACTGGCGGTGCTGGCCTTGCTCGCGCGCTGGGCCTGGTCG GTACCGGCGCCGGCATTGCTGCAGCGTTGGCGCGTGACCGCGCTTGGTGTGCTCGGCTGGGCATTGATCACCGGCAGCAC CTTCCACAGCGTGCATCACTGGGGCGGCGTGCCGTGGGATTCTGCGTTGATCGGCGCCACCTTGTCGCAGACCAGCCTCA CCATCGTGTGGAGCGTGCTGGGCGTGCTGGGCTGGGTGATCGGCTCGCGTCGCGGGCAGCGTGGGTTGTGGCTGGGCGGC GCGTTGCTCATGGGTCTGGTGCTGGCGAAGCTGGTGTTGGTCGACCGCCAGCATCTGGGCAACTTGCTCGGCATCGGCTC GTTCATGGCCTATGGTCTGTTGTGCACCGTAGTGGGTTACCTGGCGCCGGCACCGCCGCGTCCGCTGGCGACAGAAGCGA CTGCTGTCGAAGACGACGGCGTCGAAAAGGAGCAGGCATGA
Upstream 100 bases:
>100_bases TCTGATCGAGAGGTCGGCTGCCCAGTCGTGGCCTGAAGCTGTATGGTTCGCGCATTCGGCTGGACGCCGGCTCGGGGTTG GTGCGTTGGAAACGATAATC
Downstream 100 bases:
>100_bases AATCGATGCGATGGGCGCTACTGGTGATGGTGCCGATGCTGGCGCATGCCGCTGATGTGCGGCAGGACTACCGCCAGCAG TGGCCGCTGCAGGTAACTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 946; Mature: 946
Protein sequence:
>946_residues MLAALVLIAVPVGVVVALVWIARLRRRVSSLEQRLAQWQAGTAERADAPAYAQGRTWERPEVVSDLDAGLVSRADGNVPV SGTSGAAQRGESWQVAAAAEQNAVDVSVVPPPLPAQTPATAIARDGTAMSEVPGQHSQPAQPQPAQPQPAQPQPTQPQPP QRPQIPSEPCVIVRAASALKRWFTEGNVPVKVGMLVLLAGVASLLKYASDQGWMRMPIELRLAGISVLALVGLVFGWKQR EQRPGFALALQGGAIGGLLLTVFAAFKLYALLDAGPALGISVVLIAGMCVLAVLQDSRTLAVLGVLAGFLAPIGLSTGSG NHVGLFTYYAILNAGIVAIAWLRPWRVLNLLGFAFTFGIGIVWGALQYTPAKFATTEPFLLLFFAMYVAIPVLHARRGDG SAGKVIDGSLLFGTPLVAFALQAGLLEGDQLPLALCAVVVAAVYAGLASWLLRRAPTRLLGQAHAMLAVGFATLAIPLAL SARATASVFALEGVGLLWLGLRQQRRIPQISGVALQLLAAVGVAFGVDAWRYDAVAVANATCMSTLLIALSGWVSAWFMR DAGHPRCALVAYLWGLGWSTFCGVHEILRFADLCSEPDLLLGFVALSLWLAAEVHRRRPATALVWTVMSGLVLAAPLALW QGQAHTQPFAHWGALAWGVFAVAGARALWCLRTQQGAGAMAAQFIWWLLWPLVVALGAAWWADAFLLANGWRCALLAAPW LVVASLGLLRWPWLAWPQGASFDPARNALLSCVFAVLGIGWLLVLLDPVSAAPLPWLPLLNPAELAQLAVLALLARWAWS VPAPALLQRWRVTALGVLGWALITGSTFHSVHHWGGVPWDSALIGATLSQTSLTIVWSVLGVLGWVIGSRRGQRGLWLGG ALLMGLVLAKLVLVDRQHLGNLLGIGSFMAYGLLCTVVGYLAPAPPRPLATEATAVEDDGVEKEQA
Sequences:
>Translated_946_residues MLAALVLIAVPVGVVVALVWIARLRRRVSSLEQRLAQWQAGTAERADAPAYAQGRTWERPEVVSDLDAGLVSRADGNVPV SGTSGAAQRGESWQVAAAAEQNAVDVSVVPPPLPAQTPATAIARDGTAMSEVPGQHSQPAQPQPAQPQPAQPQPTQPQPP QRPQIPSEPCVIVRAASALKRWFTEGNVPVKVGMLVLLAGVASLLKYASDQGWMRMPIELRLAGISVLALVGLVFGWKQR EQRPGFALALQGGAIGGLLLTVFAAFKLYALLDAGPALGISVVLIAGMCVLAVLQDSRTLAVLGVLAGFLAPIGLSTGSG NHVGLFTYYAILNAGIVAIAWLRPWRVLNLLGFAFTFGIGIVWGALQYTPAKFATTEPFLLLFFAMYVAIPVLHARRGDG SAGKVIDGSLLFGTPLVAFALQAGLLEGDQLPLALCAVVVAAVYAGLASWLLRRAPTRLLGQAHAMLAVGFATLAIPLAL SARATASVFALEGVGLLWLGLRQQRRIPQISGVALQLLAAVGVAFGVDAWRYDAVAVANATCMSTLLIALSGWVSAWFMR DAGHPRCALVAYLWGLGWSTFCGVHEILRFADLCSEPDLLLGFVALSLWLAAEVHRRRPATALVWTVMSGLVLAAPLALW QGQAHTQPFAHWGALAWGVFAVAGARALWCLRTQQGAGAMAAQFIWWLLWPLVVALGAAWWADAFLLANGWRCALLAAPW LVVASLGLLRWPWLAWPQGASFDPARNALLSCVFAVLGIGWLLVLLDPVSAAPLPWLPLLNPAELAQLAVLALLARWAWS VPAPALLQRWRVTALGVLGWALITGSTFHSVHHWGGVPWDSALIGATLSQTSLTIVWSVLGVLGWVIGSRRGQRGLWLGG ALLMGLVLAKLVLVDRQHLGNLLGIGSFMAYGLLCTVVGYLAPAPPRPLATEATAVEDDGVEKEQA >Mature_946_residues MLAALVLIAVPVGVVVALVWIARLRRRVSSLEQRLAQWQAGTAERADAPAYAQGRTWERPEVVSDLDAGLVSRADGNVPV SGTSGAAQRGESWQVAAAAEQNAVDVSVVPPPLPAQTPATAIARDGTAMSEVPGQHSQPAQPQPAQPQPAQPQPTQPQPP QRPQIPSEPCVIVRAASALKRWFTEGNVPVKVGMLVLLAGVASLLKYASDQGWMRMPIELRLAGISVLALVGLVFGWKQR EQRPGFALALQGGAIGGLLLTVFAAFKLYALLDAGPALGISVVLIAGMCVLAVLQDSRTLAVLGVLAGFLAPIGLSTGSG NHVGLFTYYAILNAGIVAIAWLRPWRVLNLLGFAFTFGIGIVWGALQYTPAKFATTEPFLLLFFAMYVAIPVLHARRGDG SAGKVIDGSLLFGTPLVAFALQAGLLEGDQLPLALCAVVVAAVYAGLASWLLRRAPTRLLGQAHAMLAVGFATLAIPLAL SARATASVFALEGVGLLWLGLRQQRRIPQISGVALQLLAAVGVAFGVDAWRYDAVAVANATCMSTLLIALSGWVSAWFMR DAGHPRCALVAYLWGLGWSTFCGVHEILRFADLCSEPDLLLGFVALSLWLAAEVHRRRPATALVWTVMSGLVLAAPLALW QGQAHTQPFAHWGALAWGVFAVAGARALWCLRTQQGAGAMAAQFIWWLLWPLVVALGAAWWADAFLLANGWRCALLAAPW LVVASLGLLRWPWLAWPQGASFDPARNALLSCVFAVLGIGWLLVLLDPVSAAPLPWLPLLNPAELAQLAVLALLARWAWS VPAPALLQRWRVTALGVLGWALITGSTFHSVHHWGGVPWDSALIGATLSQTSLTIVWSVLGVLGWVIGSRRGQRGLWLGG ALLMGLVLAKLVLVDRQHLGNLLGIGSFMAYGLLCTVVGYLAPAPPRPLATEATAVEDDGVEKEQA
Specific function: Unknown
COG id: COG5373
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100301; Mature: 100301
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAALVLIAVPVGVVVALVWIARLRRRVSSLEQRLAQWQAGTAERADAPAYAQGRTWERP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC EVVSDLDAGLVSRADGNVPVSGTSGAAQRGESWQVAAAAEQNAVDVSVVPPPLPAQTPAT HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCH AIARDGTAMSEVPGQHSQPAQPQPAQPQPAQPQPTQPQPPQRPQIPSEPCVIVRAASALK HHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH RWFTEGNVPVKVGMLVLLAGVASLLKYASDQGWMRMPIELRLAGISVLALVGLVFGWKQR HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHH EQRPGFALALQGGAIGGLLLTVFAAFKLYALLDAGPALGISVVLIAGMCVLAVLQDSRTL HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH AVLGVLAGFLAPIGLSTGSGNHVGLFTYYAILNAGIVAIAWLRPWRVLNLLGFAFTFGIG HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH IVWGALQYTPAKFATTEPFLLLFFAMYVAIPVLHARRGDGSAGKVIDGSLLFGTPLVAFA HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH LQAGLLEGDQLPLALCAVVVAAVYAGLASWLLRRAPTRLLGQAHAMLAVGFATLAIPLAL HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH SARATASVFALEGVGLLWLGLRQQRRIPQISGVALQLLAAVGVAFGVDAWRYDAVAVANA HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TCMSTLLIALSGWVSAWFMRDAGHPRCALVAYLWGLGWSTFCGVHEILRFADLCSEPDLL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH LGFVALSLWLAAEVHRRRPATALVWTVMSGLVLAAPLALWQGQAHTQPFAHWGALAWGVF HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH AVAGARALWCLRTQQGAGAMAAQFIWWLLWPLVVALGAAWWADAFLLANGWRCALLAAPW HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LVVASLGLLRWPWLAWPQGASFDPARNALLSCVFAVLGIGWLLVLLDPVSAAPLPWLPLL HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NPAELAQLAVLALLARWAWSVPAPALLQRWRVTALGVLGWALITGSTFHSVHHWGGVPWD CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC SALIGATLSQTSLTIVWSVLGVLGWVIGSRRGQRGLWLGGALLMGLVLAKLVLVDRQHLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH NLLGIGSFMAYGLLCTVVGYLAPAPPRPLATEATAVEDDGVEKEQA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLAALVLIAVPVGVVVALVWIARLRRRVSSLEQRLAQWQAGTAERADAPAYAQGRTWERP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC EVVSDLDAGLVSRADGNVPVSGTSGAAQRGESWQVAAAAEQNAVDVSVVPPPLPAQTPAT HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCH AIARDGTAMSEVPGQHSQPAQPQPAQPQPAQPQPTQPQPPQRPQIPSEPCVIVRAASALK HHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH RWFTEGNVPVKVGMLVLLAGVASLLKYASDQGWMRMPIELRLAGISVLALVGLVFGWKQR HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHH EQRPGFALALQGGAIGGLLLTVFAAFKLYALLDAGPALGISVVLIAGMCVLAVLQDSRTL HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHH AVLGVLAGFLAPIGLSTGSGNHVGLFTYYAILNAGIVAIAWLRPWRVLNLLGFAFTFGIG HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH IVWGALQYTPAKFATTEPFLLLFFAMYVAIPVLHARRGDGSAGKVIDGSLLFGTPLVAFA HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH LQAGLLEGDQLPLALCAVVVAAVYAGLASWLLRRAPTRLLGQAHAMLAVGFATLAIPLAL HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH SARATASVFALEGVGLLWLGLRQQRRIPQISGVALQLLAAVGVAFGVDAWRYDAVAVANA HHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH TCMSTLLIALSGWVSAWFMRDAGHPRCALVAYLWGLGWSTFCGVHEILRFADLCSEPDLL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH LGFVALSLWLAAEVHRRRPATALVWTVMSGLVLAAPLALWQGQAHTQPFAHWGALAWGVF HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH AVAGARALWCLRTQQGAGAMAAQFIWWLLWPLVVALGAAWWADAFLLANGWRCALLAAPW HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LVVASLGLLRWPWLAWPQGASFDPARNALLSCVFAVLGIGWLLVLLDPVSAAPLPWLPLL HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC NPAELAQLAVLALLARWAWSVPAPALLQRWRVTALGVLGWALITGSTFHSVHHWGGVPWD CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC SALIGATLSQTSLTIVWSVLGVLGWVIGSRRGQRGLWLGGALLMGLVLAKLVLVDRQHLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH NLLGIGSFMAYGLLCTVVGYLAPAPPRPLATEATAVEDDGVEKEQA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA