| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is yacH [H]
Identifier: 84624581
GI number: 84624581
Start: 3305275
End: 3307098
Strand: Direct
Name: yacH [H]
Synonym: XOO_2924
Alternate gene names: 84624581
Gene position: 3305275-3307098 (Clockwise)
Preceding gene: 84624580
Following gene: 84624583
Centisome position: 66.91
GC content: 67.32
Gene sequence:
>1824_bases ATGCAACGCACATGGTCACAAGGGCGCCTTGCCTTGGCGCTGTCGATCGCATCCACCGGCATGATTGCACTGGGCGGGTG CCAACGCGCCGAGTCGCCGGCGCCGGCCGCCGCCGAGCCTCCACCTCCTCCCAGTGCGGTCGCAACGCCGGCTTACACGC CGCCCACGGCGGATCAGCTGTACCAACTGGTTGCACCGATCGCCCTGTTTCCGGATAAGTTGCTGGCGCAGACACTGGCC GCTTCGGTCTATCCCGATCAGGTGGTCACTGCGCAGGAGTGGCTGCGCAGCAACAGCGGCCTGAGCGCCGCCGATCGTGC GCAGGCCACGGTGTCGCAATCCTGGGATCCGAGCATCAAGGCCCTGACCGCGTTTCCGGATGTCGTGTCCCAGTTGGCCG GCAATCTCGATTGGACGCGTGCGCTCGGCGACGCCTATGCCCACGACCCCAACGATGTGCTCAATGCCGTGCAGATCATG CGCCAACGCGCCCAGGCCAGCGGCCACCTGCGCAGCACGCCGCAACAGCAGGTGCAGGTCGCACGCCATGTGGTGGTGAC GCCCATTCTGGATGAGGGACGCATCCCGCCGCCCTCGCAGATGATCACCATCGAACCGGCGGAGCGGGACGTGGTGTACG TTCCGCACTACGACCCCGGCGTGGTCTACGGCACGCCGGTGGATGTCTATCGCGAGTATCGCTACCGCCCGGTCCGCTGG TACGACGAAGGCGACGTCGTCACCACCGGCCTGGTGTCCTTCGGCGTCGGCGTGCTGGTGGGCGGCGCACTGGAACATCA TCACGGCTGGTTCGGCTGGGCCGAGCCGGCGCCCGCCTGGCACAGCTGGGGCTGGAATAGCTGGGGCGTGAACTGGAACG CGCCGCCGGCCGCCCCGCATTACGTGGTCTACCAGAACCATGTCTATGCGCCACGCACCACTATCATCAACAACCGCAAT ACCTATATCGATTCGCGCTCGTATGTGAATCAGGATCAGCGCCATTGGTCCAACGCGACATCCGCGCCTGCGCCCGTTGC CGGCATTGCCCCGATCGGCTTCCACGCAGCGCGGGCGGCCGCTCTACCGGCAGCGATGGCCAGCGCACAAGGGCTCAGGG GGGGGGCAGGAGCCGGTGCGCCGGCGCCCTCGCCCGCCCAGCTGCATCGTCCGCCCGACTATGCGCATCTGGCAGCGCCG CATTTCAATGCGCAGATGCTGCAGCCGGGCCGTCCGGTAGCGATGAACGCTTCGTCGCCGTCGCCGTTGTCGCATGCTGC GCCGCTGACAACCGTGGCCCATGCGATGCAGCCACCGCCTGCAGGAATACATTCGCCGCACATGCAAGCGCCGGCATTCG CATCGGTTACACCGCTCGAGCGAGTGAAGGATCTGCAGGCCGCACAGCAGCGCATGGCGCAACTGCACGCGGAGTCGCGG GCAGCGCAGGAGAAGGCAGCTGCGGCCAACCGCGCACATGCGGCCATGCCGCCGCGCGATGCATTTGCCAGCCGCGACGC CCGCAATAGCCCGTTCCGTTCGCAAGCCCAACCTGTGCGATGGAAGCCGCCGGTGCAAGAGCAGCGACAGCTGCCGCCCC ATCAGCAATTTGCGTTCGCAGCCTCGCCGCGTGGCGAACATGCGCAGCCATCGCAGCCGCGCTACGAACCGCACCCGGTC ATGAAGCCTGAGCCGCAGCAACACATGCAGCGAATGGCCTCCTTCACGCCGCCGCGCGCCGCGCCAACCCGTCCGGCGGA CACGCACCAGCAGCGCCCGCATCCGGCAGCGCAGCCGCAATATCACGAACACCACCATAGCTGA
Upstream 100 bases:
>100_bases GTGGCGCTCGGTCGACGGGAGAGCAGTTTTAGAAAGGTTCCAGACATTCAGACCGGCGCATGGTACGCGCGTCATCCACG CGCACACAGCGAGGTGCCGC
Downstream 100 bases:
>100_bases GCCAGCACGCTGACGCAGCCACGATGGCTGCGTCAGCGGCCAAGCTGGTCCAGCGCTTCGGCCAGTTCGGGCGCCAGCGG CGCGCTCAGCACGTACGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 607; Mature: 607
Protein sequence:
>607_residues MQRTWSQGRLALALSIASTGMIALGGCQRAESPAPAAAEPPPPPSAVATPAYTPPTADQLYQLVAPIALFPDKLLAQTLA ASVYPDQVVTAQEWLRSNSGLSAADRAQATVSQSWDPSIKALTAFPDVVSQLAGNLDWTRALGDAYAHDPNDVLNAVQIM RQRAQASGHLRSTPQQQVQVARHVVVTPILDEGRIPPPSQMITIEPAERDVVYVPHYDPGVVYGTPVDVYREYRYRPVRW YDEGDVVTTGLVSFGVGVLVGGALEHHHGWFGWAEPAPAWHSWGWNSWGVNWNAPPAAPHYVVYQNHVYAPRTTIINNRN TYIDSRSYVNQDQRHWSNATSAPAPVAGIAPIGFHAARAAALPAAMASAQGLRGGAGAGAPAPSPAQLHRPPDYAHLAAP HFNAQMLQPGRPVAMNASSPSPLSHAAPLTTVAHAMQPPPAGIHSPHMQAPAFASVTPLERVKDLQAAQQRMAQLHAESR AAQEKAAAANRAHAAMPPRDAFASRDARNSPFRSQAQPVRWKPPVQEQRQLPPHQQFAFAASPRGEHAQPSQPRYEPHPV MKPEPQQHMQRMASFTPPRAAPTRPADTHQQRPHPAAQPQYHEHHHS
Sequences:
>Translated_607_residues MQRTWSQGRLALALSIASTGMIALGGCQRAESPAPAAAEPPPPPSAVATPAYTPPTADQLYQLVAPIALFPDKLLAQTLA ASVYPDQVVTAQEWLRSNSGLSAADRAQATVSQSWDPSIKALTAFPDVVSQLAGNLDWTRALGDAYAHDPNDVLNAVQIM RQRAQASGHLRSTPQQQVQVARHVVVTPILDEGRIPPPSQMITIEPAERDVVYVPHYDPGVVYGTPVDVYREYRYRPVRW YDEGDVVTTGLVSFGVGVLVGGALEHHHGWFGWAEPAPAWHSWGWNSWGVNWNAPPAAPHYVVYQNHVYAPRTTIINNRN TYIDSRSYVNQDQRHWSNATSAPAPVAGIAPIGFHAARAAALPAAMASAQGLRGGAGAGAPAPSPAQLHRPPDYAHLAAP HFNAQMLQPGRPVAMNASSPSPLSHAAPLTTVAHAMQPPPAGIHSPHMQAPAFASVTPLERVKDLQAAQQRMAQLHAESR AAQEKAAAANRAHAAMPPRDAFASRDARNSPFRSQAQPVRWKPPVQEQRQLPPHQQFAFAASPRGEHAQPSQPRYEPHPV MKPEPQQHMQRMASFTPPRAAPTRPADTHQQRPHPAAQPQYHEHHHS >Mature_607_residues MQRTWSQGRLALALSIASTGMIALGGCQRAESPAPAAAEPPPPPSAVATPAYTPPTADQLYQLVAPIALFPDKLLAQTLA ASVYPDQVVTAQEWLRSNSGLSAADRAQATVSQSWDPSIKALTAFPDVVSQLAGNLDWTRALGDAYAHDPNDVLNAVQIM RQRAQASGHLRSTPQQQVQVARHVVVTPILDEGRIPPPSQMITIEPAERDVVYVPHYDPGVVYGTPVDVYREYRYRPVRW YDEGDVVTTGLVSFGVGVLVGGALEHHHGWFGWAEPAPAWHSWGWNSWGVNWNAPPAAPHYVVYQNHVYAPRTTIINNRN TYIDSRSYVNQDQRHWSNATSAPAPVAGIAPIGFHAARAAALPAAMASAQGLRGGAGAGAPAPSPAQLHRPPDYAHLAAP HFNAQMLQPGRPVAMNASSPSPLSHAAPLTTVAHAMQPPPAGIHSPHMQAPAFASVTPLERVKDLQAAQQRMAQLHAESR AAQEKAAAANRAHAAMPPRDAFASRDARNSPFRSQAQPVRWKPPVQEQRQLPPHQQFAFAASPRGEHAQPSQPRYEPHPV MKPEPQQHMQRMASFTPPRAAPTRPADTHQQRPHPAAQPQYHEHHHS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786308, Length=207, Percent_Identity=39.1304347826087, Blast_Score=134, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021728 [H]
Pfam domain/function: PF11737 DUF3300 [H]
EC number: NA
Molecular weight: Translated: 65811; Mature: 65811
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRTWSQGRLALALSIASTGMIALGGCQRAESPAPAAAEPPPPPSAVATPAYTPPTADQL CCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH YQLVAPIALFPDKLLAQTLAASVYPDQVVTAQEWLRSNSGLSAADRAQATVSQSWDPSIK HHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHH ALTAFPDVVSQLAGNLDWTRALGDAYAHDPNDVLNAVQIMRQRAQASGHLRSTPQQQVQV HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH ARHVVVTPILDEGRIPPPSQMITIEPAERDVVYVPHYDPGVVYGTPVDVYREYRYRPVRW HHHHEEEEECCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEECCCHHHHHHHCCCCEEE YDEGDVVTTGLVSFGVGVLVGGALEHHHGWFGWAEPAPAWHSWGWNSWGVNWNAPPAAPH ECCCCEEHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCE YVVYQNHVYAPRTTIINNRNTYIDSRSYVNQDQRHWSNATSAPAPVAGIAPIGFHAARAA EEEEECCCCCCCEEEECCCCCEECCHHHHCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH ALPAAMASAQGLRGGAGAGAPAPSPAQLHRPPDYAHLAAPHFNAQMLQPGRPVAMNASSP HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHCCCCCCEEECCCCC SPLSHAAPLTTVAHAMQPPPAGIHSPHMQAPAFASVTPLERVKDLQAAQQRMAQLHAESR CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAQEKAAAANRAHAAMPPRDAFASRDARNSPFRSQAQPVRWKPPVQEQRQLPPHQQFAFA HHHHHHHHHHCHHCCCCCHHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHCCCCHHHEEEE ASPRGEHAQPSQPRYEPHPVMKPEPQQHMQRMASFTPPRAAPTRPADTHQQRPHPAAQPQ CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC YHEHHHS HHHCCCC >Mature Secondary Structure MQRTWSQGRLALALSIASTGMIALGGCQRAESPAPAAAEPPPPPSAVATPAYTPPTADQL CCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH YQLVAPIALFPDKLLAQTLAASVYPDQVVTAQEWLRSNSGLSAADRAQATVSQSWDPSIK HHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHH ALTAFPDVVSQLAGNLDWTRALGDAYAHDPNDVLNAVQIMRQRAQASGHLRSTPQQQVQV HHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH ARHVVVTPILDEGRIPPPSQMITIEPAERDVVYVPHYDPGVVYGTPVDVYREYRYRPVRW HHHHEEEEECCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEECCCHHHHHHHCCCCEEE YDEGDVVTTGLVSFGVGVLVGGALEHHHGWFGWAEPAPAWHSWGWNSWGVNWNAPPAAPH ECCCCEEHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCE YVVYQNHVYAPRTTIINNRNTYIDSRSYVNQDQRHWSNATSAPAPVAGIAPIGFHAARAA EEEEECCCCCCCEEEECCCCCEECCHHHHCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH ALPAAMASAQGLRGGAGAGAPAPSPAQLHRPPDYAHLAAPHFNAQMLQPGRPVAMNASSP HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHCCCCCCEEECCCCC SPLSHAAPLTTVAHAMQPPPAGIHSPHMQAPAFASVTPLERVKDLQAAQQRMAQLHAESR CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH AAQEKAAAANRAHAAMPPRDAFASRDARNSPFRSQAQPVRWKPPVQEQRQLPPHQQFAFA HHHHHHHHHHCHHCCCCCHHHHHCCCCCCCCCHHCCCCCCCCCCHHHHHCCCCHHHEEEE ASPRGEHAQPSQPRYEPHPVMKPEPQQHMQRMASFTPPRAAPTRPADTHQQRPHPAAQPQ CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC YHEHHHS HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8202364; 9278503 [H]