| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is zupT [H]
Identifier: 84624579
GI number: 84624579
Start: 3304439
End: 3304672
Strand: Direct
Name: zupT [H]
Synonym: XOO_2922
Alternate gene names: 84624579
Gene position: 3304439-3304672 (Clockwise)
Preceding gene: 84624578
Following gene: 84624580
Centisome position: 66.89
GC content: 62.39
Gene sequence:
>234_bases ATGCCGTCTTCTATCTGTCTGCAGGGCACAGGCGCACAGACGCGTGACGACAATCGTGCCTATATCCGCCGGGTTGGTCT GATGACCGCTATCGCGATCACGGCGCACAACTTCCCCGAAGGATTGGCGACCTTCTTCGCCACGCTGGAGAGCCCGGCGG TGGGGATGCCGCTGGCGTTCGCCATCGCCATCCACAACATTCCCGAAGGCATTGCGATCGCGGTGCCGGTGTAG
Upstream 100 bases:
>100_bases CCAGGTGCCGGTTTCGTTCAAGCCGCCGGTGCCGCGTCCGAACGAATGTTTCGCCATCGAAGAACGCGCACGCCGCGGCG GCTGAGGACGGCGCAGGTCG
Downstream 100 bases:
>100_bases TTCGCTACCGCAACACGTTCTACGCAGTGGGCGCCAGCCTGCTCAGCGGATTGGCCGAACCGATCGGTGCGGGCATCGGC TATCTGGCGTTGTCCGGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 77; Mature: 76
Protein sequence:
>77_residues MPSSICLQGTGAQTRDDNRAYIRRVGLMTAIAITAHNFPEGLATFFATLESPAVGMPLAFAIAIHNIPEGIAIAVPV
Sequences:
>Translated_77_residues MPSSICLQGTGAQTRDDNRAYIRRVGLMTAIAITAHNFPEGLATFFATLESPAVGMPLAFAIAIHNIPEGIAIAVPV >Mature_76_residues PSSICLQGTGAQTRDDNRAYIRRVGLMTAIAITAHNFPEGLATFFATLESPAVGMPLAFAIAIHNIPEGIAIAVPV
Specific function: Mediates zinc uptake. May also transport other divalent cations [H]
COG id: COG0428
COG function: function code P; Predicted divalent heavy-metal cations transporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789419, Length=56, Percent_Identity=46.4285714285714, Blast_Score=60, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003689 [H]
Pfam domain/function: PF02535 Zip [H]
EC number: NA
Molecular weight: Translated: 8080; Mature: 7948
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSICLQGTGAQTRDDNRAYIRRVGLMTAIAITAHNFPEGLATFFATLESPAVGMPLAF CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHH AIAIHNIPEGIAIAVPV HEECCCCCCCEEEEECC >Mature Secondary Structure PSSICLQGTGAQTRDDNRAYIRRVGLMTAIAITAHNFPEGLATFFATLESPAVGMPLAF CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHH AIAIHNIPEGIAIAVPV HEECCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]