Click here to switch to the map view.

The map label for this gene is ccmH [H]

Identifier: 84624519

GI number: 84624519

Start: 3212290

End: 3212790

Strand: Direct

Name: ccmH [H]

Synonym: XOO_2862

Alternate gene names: 84624519

Gene position: 3212290-3212790 (Clockwise)

Preceding gene: 84624518

Following gene: 84624520

Centisome position: 65.02

GC content: 64.47

Gene sequence:

>501_bases
ATGATGGCGTCGGCGCGTCACGCACTGCTGTTGCATTGGCACTGGCACTGGCGCACACAAGGCCGCCGTGTGCGTCTGTT
GCTGGTGTTGCTGCTCGGCGTGCTACTTGCCCCCTCGCTGGCGGCGCAGGCCGTGGACCCACTACCGTTCAAAAACCGCA
GCGACGAAGCGCGCTATCAGCGCTTGACCGCACAGTTGCGCTGCCTGGTGTGCCAAAACGAAAACCTCGCCGATTCCAAC
GCCAGCCTCGCGCGCGACCTGCGGCATCAGGTGTTCGCGCAGCTGCAGGCCGGCAAGAGCGATGCGCAGATCAAGCAATA
CATGGTCGAGCGCTATTCGGATTTCGTGCTGTACGACCCACCGGTCAAGCGCGGCACCTGGTTGCTGTGGTTCGGGCCGG
CGCTGATGTTGGCTGGTGGTGCGGGCGTGGTGATCCACACCGTGCGCAAACGTGCGCGCATCGGGACACCGGTGGCGCCT
CAGGCTGAGGAAGAGTGGTGA

Upstream 100 bases:

>100_bases
CGCAAGGCGTGATCCGCTACAAGCACATCGGCGTGCTGACGCCGGATGCCATCGACGACGAGTTGCTGCCGGCCATCGCC
GCGCTGCCCAAGGGCACGCC

Downstream 100 bases:

>100_bases
TGATGGGTTTTTATGTCGCAAGCGCAGCGTTGGTGGCGTTGGCGTTGCTGCTGTTGTTGGTGCCGCTGCTGCGCCGGCCC
ACCGGTACTGGCAACGCGCG

Product: C-type cytochrome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MMASARHALLLHWHWHWRTQGRRVRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSN
ASLARDLRHQVFAQLQAGKSDAQIKQYMVERYSDFVLYDPPVKRGTWLLWFGPALMLAGGAGVVIHTVRKRARIGTPVAP
QAEEEW

Sequences:

>Translated_166_residues
MMASARHALLLHWHWHWRTQGRRVRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSN
ASLARDLRHQVFAQLQAGKSDAQIKQYMVERYSDFVLYDPPVKRGTWLLWFGPALMLAGGAGVVIHTVRKRARIGTPVAP
QAEEEW
>Mature_166_residues
MMASARHALLLHWHWHWRTQGRRVRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSN
ASLARDLRHQVFAQLQAGKSDAQIKQYMVERYSDFVLYDPPVKRGTWLLWFGPALMLAGGAGVVIHTVRKRARIGTPVAP
QAEEEW

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=121, Percent_Identity=42.1487603305785, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1790512, Length=85, Percent_Identity=43.5294117647059, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 18872; Mature: 18872

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMASARHALLLHWHWHWRTQGRRVRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQ
CCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHH
RLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGKSDAQIKQYMVERYSDFVLYDP
HHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECC
PVKRGTWLLWFGPALMLAGGAGVVIHTVRKRARIGTPVAPQAEEEW
CCCCCCEEEEECHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMASARHALLLHWHWHWRTQGRRVRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQ
CCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHH
RLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGKSDAQIKQYMVERYSDFVLYDP
HHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECC
PVKRGTWLLWFGPALMLAGGAGVVIHTVRKRARIGTPVAPQAEEEW
CCCCCCEEEEECHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]