| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is foxA [H]
Identifier: 84624340
GI number: 84624340
Start: 3017382
End: 3019187
Strand: Direct
Name: foxA [H]
Synonym: XOO_2683
Alternate gene names: 84624340
Gene position: 3017382-3019187 (Clockwise)
Preceding gene: 84624339
Following gene: 84624341
Centisome position: 61.08
GC content: 65.5
Gene sequence:
>1806_bases ATGACGATCTCCAAGTTCGCATCCAGCACGTTGCCTCGACACGGCATGCTGCTGTTGTCCATCAGCGGATTGTGCGCGCC AGCGGCGAACGCACAGACCAGTGAACAGCGCACCGATGCCGAGGCCACGACGCTGGACACACTGAAGGTGCAAGGACAGC GCCAACGACGGCTGGAGTCACCTGAGGCCGTCGGTAGCCGCCTGGGACTGACCCAGCGCGAGACGCCTGCGTCCCTGCAG GTCATTGACCACACTGACATCGCCACCCAGGGAGCACGCACCACCAGCGAGGTGTTCGACATGGTTGCCGGCGCCATGGT CGGCAATGTGCCGGGCAACCCCGCCGTGGTCACCATGCGTGGGTTCAGCGGTAACACGATCTCGGTCTTGCACGACGGCG TGCGGCTAGGTGCATCGACGATCGTCACCCGCAATCTGGACACCGTCGGTCTGGAGCGGGTCGAAGTACTGCGCGGCCCG GCGTCCGTGCTTTATGGCGAAGGCGCCCTGGGCGGGGCCACCGGGGCCAACAGCGACTTGCTGCGCTGGCGTGTGGATCT TCCGCTCGGCAACCACTGGTCGTTGCAGAACGATCTCAGCTGGTATCAGGCCGATCGGGACTTCTTCTACTCCGACAACT GGATCTACACCCCCGCGACGGGGCAATTGTCCAGAACCGCTGAGCGGATCCAGCACGACCAGCGGTTCTGGAACGAACGC CTCGCGCTGTCGTTCGACGGCCGGCTCGGCCGGCATCGCAACCGCTTCACCGCCGGAATGGAGCACAACGACACCAAGTT CCACACCCCGCGACAAACCGGGGTGACCACGCCGGTCTCGCCGCTCGATCCGGTACTTGGCGTCTTCCCGGATGGATCGG CCGCCAACTTTCCGGGGGCGGGCAACAACGTGATCTTCGACTCCCGCCTGCGCACCTTGGCCGTGTTCGCCGAGAACGCG CTCAACCTGACCGCCCGGTGGAGCCTGCTCGCAGGCGCGCGCGTTGAGAAGATTCAACTTTCGCGTGATATCCGCGATGT GAACACCGGCAACGTGGCGTCGTTCCGTCCCGACTACCGCCCCTTCTCCTGGCGTGTGGGCACGGTGTTCGACCTGACCC CGGAGGTGCAGCTGTATGGGCACTACGCCACTGCGGTGAGTCCGGTCTCCACCCTGCTGACCATGCGACCGGCCGCCGGC GTGTTCGATCTCAGCAAGGGGAAATCGCTTGAGGCGGGCATCAAGGCAAACGCATGGGGCAAGCGTATCGAGTGGACAGC AGCGGCTTACAGAATCGAGCGGGACAACATTCTGACCCGCGACCCTGCCAACCCAAGCATCAGCGTCCAGGGCGGCGCGC AGTCCTCCCAAGGCGTGGAGCTGTCCGCACAGGCGCAGCTCACCCGGGGCTTGCGACTGGATCTGGCGGCCGCTTACGGC ACAGCGCGCTATGACCGGCTGCTGGAGGCCGGTGGCGCCGACCGCAGCGGCAAGCGTCCTCCCAATGTTCCCGACGGCAG CGCAACCCTGGCGGCCAGCTACCGCTTCCTGCGCGTGCCGCTCTCGCTCGGGGCATCCAGCCGCAACGTTGGCGGCTTCT CTACCGACAACGCCAACACCATCCATGTCGCTGGCCACACGACCTTCGATGCATGGCTCGGCTACGACTGGCAGCGCGTC TCGGCCGTGCTGCGTGTGCGCAACCTCAGCGACGCGCTGTACGGCACGTATTCCGGTTATCCGTCCACCCACATCTACCT CGGTGCTCCCCGCAGCATCGAGCTGACCTTGCGGACGCGGTTCTGA
Upstream 100 bases:
>100_bases GTGGTCGCGGCATCTCGCTGCTGTGCCCGATGGCCAGCAGCCCGCGTGCGCCTGTCCACGCGTTTTGCAGCGGCATGCCA TGCCTCTTGAAGGTTCATCC
Downstream 100 bases:
>100_bases CATGGCCCCGAAGATCCCTTCCGGCCCTGCGGACCTCCAGCTTGCCGATGCTGCGCGGCGAGACCGGCACCGGCTGTTCT GGCGTTGGCACCTTGATGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 601; Mature: 600
Protein sequence:
>601_residues MTISKFASSTLPRHGMLLLSISGLCAPAANAQTSEQRTDAEATTLDTLKVQGQRQRRLESPEAVGSRLGLTQRETPASLQ VIDHTDIATQGARTTSEVFDMVAGAMVGNVPGNPAVVTMRGFSGNTISVLHDGVRLGASTIVTRNLDTVGLERVEVLRGP ASVLYGEGALGGATGANSDLLRWRVDLPLGNHWSLQNDLSWYQADRDFFYSDNWIYTPATGQLSRTAERIQHDQRFWNER LALSFDGRLGRHRNRFTAGMEHNDTKFHTPRQTGVTTPVSPLDPVLGVFPDGSAANFPGAGNNVIFDSRLRTLAVFAENA LNLTARWSLLAGARVEKIQLSRDIRDVNTGNVASFRPDYRPFSWRVGTVFDLTPEVQLYGHYATAVSPVSTLLTMRPAAG VFDLSKGKSLEAGIKANAWGKRIEWTAAAYRIERDNILTRDPANPSISVQGGAQSSQGVELSAQAQLTRGLRLDLAAAYG TARYDRLLEAGGADRSGKRPPNVPDGSATLAASYRFLRVPLSLGASSRNVGGFSTDNANTIHVAGHTTFDAWLGYDWQRV SAVLRVRNLSDALYGTYSGYPSTHIYLGAPRSIELTLRTRF
Sequences:
>Translated_601_residues MTISKFASSTLPRHGMLLLSISGLCAPAANAQTSEQRTDAEATTLDTLKVQGQRQRRLESPEAVGSRLGLTQRETPASLQ VIDHTDIATQGARTTSEVFDMVAGAMVGNVPGNPAVVTMRGFSGNTISVLHDGVRLGASTIVTRNLDTVGLERVEVLRGP ASVLYGEGALGGATGANSDLLRWRVDLPLGNHWSLQNDLSWYQADRDFFYSDNWIYTPATGQLSRTAERIQHDQRFWNER LALSFDGRLGRHRNRFTAGMEHNDTKFHTPRQTGVTTPVSPLDPVLGVFPDGSAANFPGAGNNVIFDSRLRTLAVFAENA LNLTARWSLLAGARVEKIQLSRDIRDVNTGNVASFRPDYRPFSWRVGTVFDLTPEVQLYGHYATAVSPVSTLLTMRPAAG VFDLSKGKSLEAGIKANAWGKRIEWTAAAYRIERDNILTRDPANPSISVQGGAQSSQGVELSAQAQLTRGLRLDLAAAYG TARYDRLLEAGGADRSGKRPPNVPDGSATLAASYRFLRVPLSLGASSRNVGGFSTDNANTIHVAGHTTFDAWLGYDWQRV SAVLRVRNLSDALYGTYSGYPSTHIYLGAPRSIELTLRTRF >Mature_600_residues TISKFASSTLPRHGMLLLSISGLCAPAANAQTSEQRTDAEATTLDTLKVQGQRQRRLESPEAVGSRLGLTQRETPASLQV IDHTDIATQGARTTSEVFDMVAGAMVGNVPGNPAVVTMRGFSGNTISVLHDGVRLGASTIVTRNLDTVGLERVEVLRGPA SVLYGEGALGGATGANSDLLRWRVDLPLGNHWSLQNDLSWYQADRDFFYSDNWIYTPATGQLSRTAERIQHDQRFWNERL ALSFDGRLGRHRNRFTAGMEHNDTKFHTPRQTGVTTPVSPLDPVLGVFPDGSAANFPGAGNNVIFDSRLRTLAVFAENAL NLTARWSLLAGARVEKIQLSRDIRDVNTGNVASFRPDYRPFSWRVGTVFDLTPEVQLYGHYATAVSPVSTLLTMRPAAGV FDLSKGKSLEAGIKANAWGKRIEWTAAAYRIERDNILTRDPANPSISVQGGAQSSQGVELSAQAQLTRGLRLDLAAAYGT ARYDRLLEAGGADRSGKRPPNVPDGSATLAASYRFLRVPLSLGASSRNVGGFSTDNANTIHVAGHTTFDAWLGYDWQRVS AVLRVRNLSDALYGTYSGYPSTHIYLGAPRSIELTLRTRF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=252, Percent_Identity=31.3492063492063, Blast_Score=95, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 65318; Mature: 65187
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISKFASSTLPRHGMLLLSISGLCAPAANAQTSEQRTDAEATTLDTLKVQGQRQRRLES CCHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCHHHEEEHEEECCHHHHCCCC PEAVGSRLGLTQRETPASLQVIDHTDIATQGARTTSEVFDMVAGAMVGNVPGNPAVVTMR HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE GFSGNTISVLHDGVRLGASTIVTRNLDTVGLERVEVLRGPASVLYGEGALGGATGANSDL CCCCCEEEEECCCHHHCCCEEEECCCCHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCE LRWRVDLPLGNHWSLQNDLSWYQADRDFFYSDNWIYTPATGQLSRTAERIQHDQRFWNER EEEEEECCCCCCCCCCCCCHHHCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCC LALSFDGRLGRHRNRFTAGMEHNDTKFHTPRQTGVTTPVSPLDPVLGVFPDGSAANFPGA EEEEECCCCCCCCCCEECCCCCCCCCCCCCHHCCCCCCCCCCCHHHEECCCCCCCCCCCC GNNVIFDSRLRTLAVFAENALNLTARWSLLAGARVEKIQLSRDIRDVNTGNVASFRPDYR CCCEEECCHHHEEEEHHHHHCCEEEEEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCC PFSWRVGTVFDLTPEVQLYGHYATAVSPVSTLLTMRPAAGVFDLSKGKSLEAGIKANAWG CCEEEECEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC KRIEWTAAAYRIERDNILTRDPANPSISVQGGAQSSQGVELSAQAQLTRGLRLDLAAAYG CEEEEEEEEEEEECCCEEECCCCCCEEEEECCCCCCCCEEEEEHHHHHCCCEEEEHHHHC TARYDRLLEAGGADRSGKRPPNVPDGSATLAASYRFLRVPLSLGASSRNVGGFSTDNANT HHHHHHHHHCCCCCCCCCCCCCCCCCCEEHEECEEEEEEEHHCCCCCCCCCCCCCCCCCE IHVAGHTTFDAWLGYDWQRVSAVLRVRNLSDALYGTYSGYPSTHIYLGAPRSIELTLRTR EEEECCCEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEEEC F C >Mature Secondary Structure TISKFASSTLPRHGMLLLSISGLCAPAANAQTSEQRTDAEATTLDTLKVQGQRQRRLES CHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCHHHEEEHEEECCHHHHCCCC PEAVGSRLGLTQRETPASLQVIDHTDIATQGARTTSEVFDMVAGAMVGNVPGNPAVVTMR HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE GFSGNTISVLHDGVRLGASTIVTRNLDTVGLERVEVLRGPASVLYGEGALGGATGANSDL CCCCCEEEEECCCHHHCCCEEEECCCCHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCE LRWRVDLPLGNHWSLQNDLSWYQADRDFFYSDNWIYTPATGQLSRTAERIQHDQRFWNER EEEEEECCCCCCCCCCCCCHHHCCCCCEEECCCEEEECCCCCHHHHHHHHHHHHHHHHCC LALSFDGRLGRHRNRFTAGMEHNDTKFHTPRQTGVTTPVSPLDPVLGVFPDGSAANFPGA EEEEECCCCCCCCCCEECCCCCCCCCCCCCHHCCCCCCCCCCCHHHEECCCCCCCCCCCC GNNVIFDSRLRTLAVFAENALNLTARWSLLAGARVEKIQLSRDIRDVNTGNVASFRPDYR CCCEEECCHHHEEEEHHHHHCCEEEEEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCC PFSWRVGTVFDLTPEVQLYGHYATAVSPVSTLLTMRPAAGVFDLSKGKSLEAGIKANAWG CCEEEECEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC KRIEWTAAAYRIERDNILTRDPANPSISVQGGAQSSQGVELSAQAQLTRGLRLDLAAAYG CEEEEEEEEEEEECCCEEECCCCCCEEEEECCCCCCCCEEEEEHHHHHCCCEEEEHHHHC TARYDRLLEAGGADRSGKRPPNVPDGSATLAASYRFLRVPLSLGASSRNVGGFSTDNANT HHHHHHHHHCCCCCCCCCCCCCCCCCCEEHEECEEEEEEEHHCCCCCCCCCCCCCCCCCE IHVAGHTTFDAWLGYDWQRVSAVLRVRNLSDALYGTYSGYPSTHIYLGAPRSIELTLRTR EEEECCCEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEEEC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 10103258; 7642488 [H]