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The map label for this gene is sodA [H]

Identifier: 84624341

GI number: 84624341

Start: 3019612

End: 3020319

Strand: Direct

Name: sodA [H]

Synonym: XOO_2684

Alternate gene names: 84624341

Gene position: 3019612-3020319 (Clockwise)

Preceding gene: 84624340

Following gene: 84624342

Centisome position: 61.12

GC content: 61.86

Gene sequence:

>708_bases
ATGAAACGACTCGCCCTCCGGTCGCTGTTTGCGACCGCCCTGTTGGCCACGGCCAGTCTGGCCTCGGCTGCCGATCCCGT
GCAGGCACCGTTCTCGTTGCCCGCCCTGCCCTATGCCAGCAACGCACTTGAACCGGCGATCGACACAGCCACGATGGAGA
TCCATCACGATCGCCATCACAAGGCCTACGTGGACAATCTCAACGCCAAGGTAAAGGACTACCCGGCATTGGCCAGCACC
TCGTTGGAAGACATCCAGGCCAGCGTGTCGCGCTATGACGCTGCAGTGCGCAACAACGCCGGGGGACACTACAACCACAG
CCTGTTCTGGACACTGATGGCGCCCGCGGGCAAAGGCGGCAGCCCGTCGCCGGCACTGAAGGCAAAACTCGTGCAGACCT
TTGGTTCGCAGGAGGCATTCCAGACCAAGTTCACCGAGACGGCGACCAAGCTGTTCGGATCGGGCTGGGCTTGGCTGATC
CTAAAGCCGGATGGCTCGCTCGCCATCACCACCACGCCCAACCAGGACAACCCACTGATGGACGTGGTCGCCGAACGTGG
CACGCCACTGCTGGCGCTGGATGTCTGGGAACACGCTTACTACCTGCATTACCAGAACAAGCGCGCCGACTACATCAAGG
CGTGGTGGCAGGTCGTCAACTGGAATCAGGTCAATACCCGCTACGACGCTGCCACCGGCAAGCACTGA

Upstream 100 bases:

>100_bases
ACCGCTGTTCCGATGGCTGGACTGATACACGCAGGTGTTTGCATCGCCCGATTGCCGGGCATTCCGGGAGCCTGGCTCCC
AACTTACTGGAGCAATAAGC

Downstream 100 bases:

>100_bases
GCGTTCCTGCAACCGGGTCGTGACGCCGCGCAGGACGCGGGCGGCGCCTTTGAGCCATTCGGCCACCCGCCGAATGAGCG
CCGCATCGCGCAACCTGCCG

Product: superoxidase dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKRLALRSLFATALLATASLASAADPVQAPFSLPALPYASNALEPAIDTATMEIHHDRHHKAYVDNLNAKVKDYPALAST
SLEDIQASVSRYDAAVRNNAGGHYNHSLFWTLMAPAGKGGSPSPALKAKLVQTFGSQEAFQTKFTETATKLFGSGWAWLI
LKPDGSLAITTTPNQDNPLMDVVAERGTPLLALDVWEHAYYLHYQNKRADYIKAWWQVVNWNQVNTRYDAATGKH

Sequences:

>Translated_235_residues
MKRLALRSLFATALLATASLASAADPVQAPFSLPALPYASNALEPAIDTATMEIHHDRHHKAYVDNLNAKVKDYPALAST
SLEDIQASVSRYDAAVRNNAGGHYNHSLFWTLMAPAGKGGSPSPALKAKLVQTFGSQEAFQTKFTETATKLFGSGWAWLI
LKPDGSLAITTTPNQDNPLMDVVAERGTPLLALDVWEHAYYLHYQNKRADYIKAWWQVVNWNQVNTRYDAATGKH
>Mature_235_residues
MKRLALRSLFATALLATASLASAADPVQAPFSLPALPYASNALEPAIDTATMEIHHDRHHKAYVDNLNAKVKDYPALAST
SLEDIQASVSRYDAAVRNNAGGHYNHSLFWTLMAPAGKGGSPSPALKAKLVQTFGSQEAFQTKFTETATKLFGSGWAWLI
LKPDGSLAITTTPNQDNPLMDVVAERGTPLLALDVWEHAYYLHYQNKRADYIKAWWQVVNWNQVNTRYDAATGKH

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=46.5346534653465, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=46.5346534653465, Blast_Score=172, Evalue=2e-43,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=38.6138613861386, Blast_Score=124, Evalue=6e-29,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=47.5728155339806, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=43.8144329896907, Blast_Score=166, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=204, Percent_Identity=40.1960784313725, Blast_Score=153, Evalue=9e-38,
Organism=Caenorhabditis elegans, GI17506561, Length=207, Percent_Identity=40.0966183574879, Blast_Score=150, Evalue=5e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=209, Percent_Identity=38.755980861244, Blast_Score=140, Evalue=2e-34,
Organism=Drosophila melanogaster, GI17136812, Length=225, Percent_Identity=39.1111111111111, Blast_Score=149, Evalue=1e-36,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25823; Mature: 25823

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLALRSLFATALLATASLASAADPVQAPFSLPALPYASNALEPAIDTATMEIHHDRHH
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCH
KAYVDNLNAKVKDYPALASTSLEDIQASVSRYDAAVRNNAGGHYNHSLFWTLMAPAGKGG
HHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
SPSPALKAKLVQTFGSQEAFQTKFTETATKLFGSGWAWLILKPDGSLAITTTPNQDNPLM
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCHHH
DVVAERGTPLLALDVWEHAYYLHYQNKRADYIKAWWQVVNWNQVNTRYDAATGKH
HHHHHCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCC
>Mature Secondary Structure
MKRLALRSLFATALLATASLASAADPVQAPFSLPALPYASNALEPAIDTATMEIHHDRHH
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCH
KAYVDNLNAKVKDYPALASTSLEDIQASVSRYDAAVRNNAGGHYNHSLFWTLMAPAGKGG
HHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC
SPSPALKAKLVQTFGSQEAFQTKFTETATKLFGSGWAWLILKPDGSLAITTTPNQDNPLM
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCHHH
DVVAERGTPLLALDVWEHAYYLHYQNKRADYIKAWWQVVNWNQVNTRYDAATGKH
HHHHHCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9074511 [H]