| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is ynhA [C]
Identifier: 84624182
GI number: 84624182
Start: 2818997
End: 2819434
Strand: Direct
Name: ynhA [C]
Synonym: XOO_2525
Alternate gene names: 84624182
Gene position: 2818997-2819434 (Clockwise)
Preceding gene: 84624181
Following gene: 84624183
Centisome position: 57.06
GC content: 62.33
Gene sequence:
>438_bases ATGACCACCTCCCCCTTCCCGCTCGAACCTACAGCCACCGAAGCGCAGGCCGCCATTGCCGAGGAATTTTCCTTTTTCGG CGACTGGTCCGAGCGCTATCAGTACCTGATCGATCTTGGCCGCAAGTTGCCCGCCTTTCCGGAACACTGGAAGACCGAAG AACACCGTCTGCATGGCTGCCAGTCGATGGTGTGGATCGTGCCGGAAGGCAATGCCGAACGGCTGGATTTCCACGCCGTC AGCGATTCGGCCATCGTCTCGGGGCTGATCTATCTCGCCTTGCGCGTGTATTCGGGACGTAGCGCGCAAGAGATCCTGGC GACCGAGCCGGACTACATCGCCGGGATCGGCCTGACCAAGCATCTGTCGCCGACCCGCAGTAACGGCGTGGCCGCGATGC TCGCCTTCATTCGCGACACCGCGCGCACGCAGCAGTGA
Upstream 100 bases:
>100_bases CCGCGCGCCAGTGGCGCGCAAACCGCGCCTTCTCGCCCCGGCGGGAGAGGGGCTTTTACCGAACGCCCCTGGATTTTTGC GAACGATTCTGGAACCTTCG
Downstream 100 bases:
>100_bases GCACGCCCACACCCTTGCCCGCCGATTCGCTGCGCACGCTGTTTGCTCACCCAGGCTTCGGCCTGGTGCTGCTGTATCGC GTGGCGGCGATGCTGTCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MTTSPFPLEPTATEAQAAIAEEFSFFGDWSERYQYLIDLGRKLPAFPEHWKTEEHRLHGCQSMVWIVPEGNAERLDFHAV SDSAIVSGLIYLALRVYSGRSAQEILATEPDYIAGIGLTKHLSPTRSNGVAAMLAFIRDTARTQQ
Sequences:
>Translated_145_residues MTTSPFPLEPTATEAQAAIAEEFSFFGDWSERYQYLIDLGRKLPAFPEHWKTEEHRLHGCQSMVWIVPEGNAERLDFHAV SDSAIVSGLIYLALRVYSGRSAQEILATEPDYIAGIGLTKHLSPTRSNGVAAMLAFIRDTARTQQ >Mature_144_residues TTSPFPLEPTATEAQAAIAEEFSFFGDWSERYQYLIDLGRKLPAFPEHWKTEEHRLHGCQSMVWIVPEGNAERLDFHAVS DSAIVSGLIYLALRVYSGRSAQEILATEPDYIAGIGLTKHLSPTRSNGVAAMLAFIRDTARTQQ
Specific function: Unknown
COG id: COG2166
COG function: function code R; SufE protein probably involved in Fe-S center assembly
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sufE family [H]
Homologues:
Organism=Escherichia coli, GI1787969, Length=117, Percent_Identity=35.042735042735, Blast_Score=84, Evalue=5e-18, Organism=Escherichia coli, GI1789176, Length=138, Percent_Identity=31.8840579710145, Blast_Score=71, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003808 [H]
Pfam domain/function: PF02657 SufE [H]
EC number: NA
Molecular weight: Translated: 16184; Mature: 16053
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSPFPLEPTATEAQAAIAEEFSFFGDWSERYQYLIDLGRKLPAFPEHWKTEEHRLHGC CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCC QSMVWIVPEGNAERLDFHAVSDSAIVSGLIYLALRVYSGRSAQEILATEPDYIAGIGLTK CEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCHH HLSPTRSNGVAAMLAFIRDTARTQQ CCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure TTSPFPLEPTATEAQAAIAEEFSFFGDWSERYQYLIDLGRKLPAFPEHWKTEEHRLHGC CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCC QSMVWIVPEGNAERLDFHAVSDSAIVSGLIYLALRVYSGRSAQEILATEPDYIAGIGLTK CEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEECCCCHH HLSPTRSNGVAAMLAFIRDTARTQQ CCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7756693; 11481430 [H]