Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 84623893

GI number: 84623893

Start: 2475335

End: 2477191

Strand: Direct

Name: cph2 [H]

Synonym: XOO_2236

Alternate gene names: 84623893

Gene position: 2475335-2477191 (Clockwise)

Preceding gene: 84623891

Following gene: 84623896

Centisome position: 50.11

GC content: 64.57

Gene sequence:

>1857_bases
ATGACTTCATTGCCCGCCTCCGTTGAATCTCTTCTTCCACCAGCGCTGGACGAGTCCACCCGGCTCGCAGTGCTGCGCGG
CCTTTGCCTGCTGGATTCGCCGCCAGACCCGGTGTTCGACACCGTGGCCGCCATGGCAGCGCGCAGCATGGGGACGGAAA
TTGCGCTGGTATCGCTGGTGGACGAACACCGCCAGTGGTTCAAGACACGCATTGGCCTGGAAGAGCGGGAGACGCCACGC
AGCCAGGCGTTCTGCACGCACGCGATCCGCTCGGACGAAGTGATGGTGGTACTGGATGCGCGGCTGGATCCGCGCTTGTG
CGACAACCCGCTGGTGCTGGGGCCGCCATTCATTCGCTTCTATGTCGGCGCACCGCTGAAGCTACGCGATGGCCACAGTA
TCGGCACCTTGTGCGCCATCGGCACCAGCCCGCGCGAAGGACTGGATGCAGGGGCGATTACCCAGCTGGAAGGCCTGCGC
GACCTGGCCGTGTTGCGCGTGGAAAACCTGCGCAGCAACACCTACCGCGACGGTCCGACCGGGCTACCCAACCGCTCGCG
TTTCAGCGAAGACCTGGATACCTGGCTGTCGCAGCGCGATACCGCACCAGCCACCACGGCGGTGGCGATCGATGTGTGCG
GCAGCGATTACTTGCGCGACATGGTCAAGGCGCTGGGCTGGGAATACGCAGATGGCTATGTCTCCACGGCACAGCGCCGG
CTGACTGCCTATCTGCCCGGCGGCACCATCCTGTATCGGTTGGACCCCACCACCTTCGGCTTCCTGGCGCAGGCCGAAGG
CCAGCGCCTGGCCACGCTGTGCACGAAGGTCTCCAAGGCGTTCACCGAGCCATTGGAACATCAAGGCATCCCGCATACCG
CAGTGGCTTCGATCGGCGCGGTCTCGCTGCAGTCCAGCTACGGCGCCACTGACACCATCCGCTCGCTGACCACCTCGGTG
GATATCGCGCGCGAGCGCTGCATGCCGTGGAGCATGTATGAGCGCAAGCACGATGTTGCCCAGCGCAATACCTTCCGCCT
GCTCGCTGCCCTGCCCGCCGCGCTGGACAGCAACAACCAGCTGCGTCTGCACTATCAACCGCGCGTGGATCTGCACGACC
ACCGCTGCGTGGGCGTGGAGGCATTGCTGCGCTGGCAGCACCCGCTGATCGGCCCGGTGGTGCCGTCGGATTTCATTCCG
ATGGCCGAGAAAACCGCGCTGATCAACCGCATCACCGCCTGGGTCATCGACAACGGCATCGCGCAGGCCGCGCGCTGGCA
GCAGCAAGGCCTGGACTTCAATCTGGCCTTGAACGTGTCGGCTGCCGATCTGGATCGCCCCGGCTTTGCCGACCTGCTGC
AGCGTGGCCTGGATCGCTACAAGCTGGACCCACGCCGGCTGGAAATCGAATTCACCGAAAGCGCAATGATCCGCCACCCC
GAACACCTGGCCGAACAACTGGCCGCCATCGCAGCGCTGGGCGTACATATCGCCATCGACGACTTCGGCACTGGCTACAG
CAATTTCAGCTATCTCAAGCAACTGCCGGCCAGCGCGTTGAAGATCGATCAATCCTTCATCCGCTCGTTGCCGGACAACC
GCACCGACCGCACCCTGGTACCGGCGATGATCCAGCTTAGCCATAGCCTGGGCCAGCGCGTGGTCGCCGAAGGCATCGAA
TCGGCGGAGGCGTATGCGCACTTGCGCGCCTGGGGCTGCAACGAAGGCCAGGGGTATTGGATCGCCAAACCGATGCCGGC
CGCCGCACTGGAAACCTGGTTGGAAACGCCGTGGCACGAGCAACATGCCGCACCGGTCAATCAGCTTGCCGCCAGCCTGG
CGGCGGCACGCGTCTAA

Upstream 100 bases:

>100_bases
GCGCTCATCAGCACCAATCAGCCCAAGGCCTGCCCGGCCGAAACTGAACGGAGTCCATCACCGCCAATCAAGGGATTAGG
CTTCAGGCCGATACGAGCAT

Downstream 100 bases:

>100_bases
GCGCAGCCAGCAAAACGACTGCGCAATCGCCAGGCGTGCGCGCCCCGTGCTCGGAATCGGCATGTACCAGTGTGCACTCC
GGTTCCTGCGCGCCGTCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 618; Mature: 617

Protein sequence:

>618_residues
MTSLPASVESLLPPALDESTRLAVLRGLCLLDSPPDPVFDTVAAMAARSMGTEIALVSLVDEHRQWFKTRIGLEERETPR
SQAFCTHAIRSDEVMVVLDARLDPRLCDNPLVLGPPFIRFYVGAPLKLRDGHSIGTLCAIGTSPREGLDAGAITQLEGLR
DLAVLRVENLRSNTYRDGPTGLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRR
LTAYLPGGTILYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQSSYGATDTIRSLTTSV
DIARERCMPWSMYERKHDVAQRNTFRLLAALPAALDSNNQLRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIP
MAEKTALINRITAWVIDNGIAQAARWQQQGLDFNLALNVSAADLDRPGFADLLQRGLDRYKLDPRRLEIEFTESAMIRHP
EHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNRTDRTLVPAMIQLSHSLGQRVVAEGIE
SAEAYAHLRAWGCNEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNQLAASLAAARV

Sequences:

>Translated_618_residues
MTSLPASVESLLPPALDESTRLAVLRGLCLLDSPPDPVFDTVAAMAARSMGTEIALVSLVDEHRQWFKTRIGLEERETPR
SQAFCTHAIRSDEVMVVLDARLDPRLCDNPLVLGPPFIRFYVGAPLKLRDGHSIGTLCAIGTSPREGLDAGAITQLEGLR
DLAVLRVENLRSNTYRDGPTGLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRR
LTAYLPGGTILYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQSSYGATDTIRSLTTSV
DIARERCMPWSMYERKHDVAQRNTFRLLAALPAALDSNNQLRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIP
MAEKTALINRITAWVIDNGIAQAARWQQQGLDFNLALNVSAADLDRPGFADLLQRGLDRYKLDPRRLEIEFTESAMIRHP
EHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNRTDRTLVPAMIQLSHSLGQRVVAEGIE
SAEAYAHLRAWGCNEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNQLAASLAAARV
>Mature_617_residues
TSLPASVESLLPPALDESTRLAVLRGLCLLDSPPDPVFDTVAAMAARSMGTEIALVSLVDEHRQWFKTRIGLEERETPRS
QAFCTHAIRSDEVMVVLDARLDPRLCDNPLVLGPPFIRFYVGAPLKLRDGHSIGTLCAIGTSPREGLDAGAITQLEGLRD
LAVLRVENLRSNTYRDGPTGLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRRL
TAYLPGGTILYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQSSYGATDTIRSLTTSVD
IARERCMPWSMYERKHDVAQRNTFRLLAALPAALDSNNQLRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIPM
AEKTALINRITAWVIDNGIAQAARWQQQGLDFNLALNVSAADLDRPGFADLLQRGLDRYKLDPRRLEIEFTESAMIRHPE
HLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNRTDRTLVPAMIQLSHSLGQRVVAEGIES
AEAYAHLRAWGCNEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNQLAASLAAARV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=495, Percent_Identity=29.2929292929293, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1787541, Length=431, Percent_Identity=30.1624129930394, Blast_Score=185, Evalue=7e-48,
Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=35.7142857142857, Blast_Score=165, Evalue=1e-41,
Organism=Escherichia coli, GI226510982, Length=440, Percent_Identity=28.1818181818182, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=34.1463414634146, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=32.3529411764706, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=32.4324324324324, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787055, Length=233, Percent_Identity=32.1888412017167, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081845, Length=231, Percent_Identity=32.4675324675325, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788849, Length=282, Percent_Identity=30.4964539007092, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=30.327868852459, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=30, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787410, Length=140, Percent_Identity=27.8571428571429, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1789650, Length=195, Percent_Identity=25.1282051282051, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 68098; Mature: 67967

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLPASVESLLPPALDESTRLAVLRGLCLLDSPPDPVFDTVAAMAARSMGTEIALVSLV
CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
DEHRQWFKTRIGLEERETPRSQAFCTHAIRSDEVMVVLDARLDPRLCDNPLVLGPPFIRF
HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEECCCHHHH
YVGAPLKLRDGHSIGTLCAIGTSPREGLDAGAITQLEGLRDLAVLRVENLRSNTYRDGPT
HCCCCEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRR
CCCCHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHH
LTAYLPGGTILYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGA
HEEECCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VSLQSSYGATDTIRSLTTSVDIARERCMPWSMYERKHDVAQRNTFRLLAALPAALDSNNQ
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIPMAEKTALINRITAWVIDNGI
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AQAARWQQQGLDFNLALNVSAADLDRPGFADLLQRGLDRYKLDPRRLEIEFTESAMIRHP
HHHHHHHHHCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCH
EHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNRTDRTLV
HHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHH
PAMIQLSHSLGQRVVAEGIESAEAYAHLRAWGCNEGQGYWIAKPMPAAALETWLETPWHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCH
QHAAPVNQLAASLAAARV
HHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TSLPASVESLLPPALDESTRLAVLRGLCLLDSPPDPVFDTVAAMAARSMGTEIALVSLV
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
DEHRQWFKTRIGLEERETPRSQAFCTHAIRSDEVMVVLDARLDPRLCDNPLVLGPPFIRF
HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEECCCHHHH
YVGAPLKLRDGHSIGTLCAIGTSPREGLDAGAITQLEGLRDLAVLRVENLRSNTYRDGPT
HCCCCEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLPNRSRFSEDLDTWLSQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRR
CCCCHHHHHHHHHHHHHCCCCCCCHHEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHH
LTAYLPGGTILYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGA
HEEECCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VSLQSSYGATDTIRSLTTSVDIARERCMPWSMYERKHDVAQRNTFRLLAALPAALDSNNQ
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIPMAEKTALINRITAWVIDNGI
EEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AQAARWQQQGLDFNLALNVSAADLDRPGFADLLQRGLDRYKLDPRRLEIEFTESAMIRHP
HHHHHHHHHCCCEEEEEEEEHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCH
EHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNRTDRTLV
HHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHH
PAMIQLSHSLGQRVVAEGIESAEAYAHLRAWGCNEGQGYWIAKPMPAAALETWLETPWHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCH
QHAAPVNQLAASLAAARV
HHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]