| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is dcp [H]
Identifier: 84623877
GI number: 84623877
Start: 2459321
End: 2460550
Strand: Direct
Name: dcp [H]
Synonym: XOO_2220
Alternate gene names: 84623877
Gene position: 2459321-2460550 (Clockwise)
Preceding gene: 84623875
Following gene: 84623878
Centisome position: 49.78
GC content: 61.63
Gene sequence:
>1230_bases ATGCCGTCCTACAGCATCGCCGCACCCACCAGCACGCAGGCCGCTACCCAAGCCAACCCCTTCTTTGCCGACAGCACGCT GCCGCTGCATTACCCGCCGTTCGACAAGATCATCGACAGCGATTTCGCACCCGCCTTCGATGTCGGCATGGCCGAGCAAT TGAAGGAAGTGGAAAAAATCGCCAACCAGAACGCCAAGCCGAGCTTCGACAACACCATCGTCGCGCTGGAAAAGAGCGGC AGCACGCTCGACCGCGCCACCACGGTATTCTTCAATCTGGTCGGTGCCGACACCAACGACGCACGCAAGAAGCTGCAGGC CGACTACTCGGCCAGGTTTGCAGCGCACCGCGATGCGATTTCGCTCAACGGCAAGCTGTTCGCGCGCATCCAGACCTTGT ACGACCAACGCACCAAGCTGGGCCTGGATGCGCAAGGCGTGCGCCTGGTCGAGAAGTACGACAGCGACTTCGTGCGCGAC GGCGCCAAGCTCTCCGACGCCGACAAGACCACGCTCAAGGCAATGAACGCCGAGCCGGCCAACCTGGGCACCACCTTCAG CCAGAACGTACTGGCAGAAGTGAATGCCGCCGCCGTCGTGGTCGATGAGCTCAAGCAACTGGACGGCTTGTCGGAGGAGC AGATCGCCGCTGCCGCCGAAGCCGCCAAGGCACGCAACCTCGACGGCAAATACGTCATCGCGCTGCTCAATACCACCGGC CAACCGCCGCTGACTCAGCTGAAGAATCGCGAGCTGCGCAAGAAGATCTACAACGCTTCGGTGTCGCACGGCAGCCACGG CGGCCAGTACGACAACACCGCGCTGGTGGCGCGCATCATGAAGCTGCGTGCCGACAAGGCCAAGCTGCTCGGCTTCCCCA CCTACGCAGTCTATCGGCTGGAAAACCAGACCGCCAAGACGCCCGAAGCGGTCAACGCGATGCTGGGCAAACTGGCGCCG GCTGCGGTGGCCAATGCCAAGCGCGAAGCCGCCGATCTGCAGGCCATGATCGACAAGGAACAAAAGGCCGCGCGCAAGCC GACCTTCAAGCTGGAAGCCTGGGATTGGGCCTACTACAGCGAGAAGGTGCGCCAGGCCAATTACAACTTCGACCAATCGC AGGTCAAGCCCTACTTCGAGTTGAAGAACGTGCTGGAAAACGGCGTTTTCTATGCAGCCAATCAGGAATACGGCCTGACC TTCAAGCAGCGTACCGACCTGCCGACCTAG
Upstream 100 bases:
>100_bases TGTCCCGCGTGGCTGGATTAGCCTCGGCGGTTCGCACTTTGGAGCAACGCTCTTGACCACCCGTCTCGCTTTTGCCCTGG CCGCTTCCCTGGGACTCGCC
Downstream 100 bases:
>100_bases CGCGACGACATCACCGTCTACGACATGTTCGACGCCGACGGCAAGCAGTTGGCGATCTTCATCGCCGACATGTATGCGCG CCAATCCAAGCGCGGTGGCG
Product: putative peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MPSYSIAAPTSTQAATQANPFFADSTLPLHYPPFDKIIDSDFAPAFDVGMAEQLKEVEKIANQNAKPSFDNTIVALEKSG STLDRATTVFFNLVGADTNDARKKLQADYSARFAAHRDAISLNGKLFARIQTLYDQRTKLGLDAQGVRLVEKYDSDFVRD GAKLSDADKTTLKAMNAEPANLGTTFSQNVLAEVNAAAVVVDELKQLDGLSEEQIAAAAEAAKARNLDGKYVIALLNTTG QPPLTQLKNRELRKKIYNASVSHGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAVYRLENQTAKTPEAVNAMLGKLAP AAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQANYNFDQSQVKPYFELKNVLENGVFYAANQEYGLT FKQRTDLPT
Sequences:
>Translated_409_residues MPSYSIAAPTSTQAATQANPFFADSTLPLHYPPFDKIIDSDFAPAFDVGMAEQLKEVEKIANQNAKPSFDNTIVALEKSG STLDRATTVFFNLVGADTNDARKKLQADYSARFAAHRDAISLNGKLFARIQTLYDQRTKLGLDAQGVRLVEKYDSDFVRD GAKLSDADKTTLKAMNAEPANLGTTFSQNVLAEVNAAAVVVDELKQLDGLSEEQIAAAAEAAKARNLDGKYVIALLNTTG QPPLTQLKNRELRKKIYNASVSHGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAVYRLENQTAKTPEAVNAMLGKLAP AAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQANYNFDQSQVKPYFELKNVLENGVFYAANQEYGLT FKQRTDLPT >Mature_408_residues PSYSIAAPTSTQAATQANPFFADSTLPLHYPPFDKIIDSDFAPAFDVGMAEQLKEVEKIANQNAKPSFDNTIVALEKSGS TLDRATTVFFNLVGADTNDARKKLQADYSARFAAHRDAISLNGKLFARIQTLYDQRTKLGLDAQGVRLVEKYDSDFVRDG AKLSDADKTTLKAMNAEPANLGTTFSQNVLAEVNAAAVVVDELKQLDGLSEEQIAAAAEAAKARNLDGKYVIALLNTTGQ PPLTQLKNRELRKKIYNASVSHGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAVYRLENQTAKTPEAVNAMLGKLAPA AVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQANYNFDQSQVKPYFELKNVLENGVFYAANQEYGLTF KQRTDLPT
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=285, Percent_Identity=25.6140350877193, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI14149738, Length=296, Percent_Identity=27.027027027027, Blast_Score=79, Evalue=7e-15, Organism=Escherichia coli, GI1787819, Length=394, Percent_Identity=43.9086294416244, Blast_Score=348, Evalue=4e-97, Organism=Escherichia coli, GI1789913, Length=392, Percent_Identity=28.3163265306122, Blast_Score=126, Evalue=3e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 45009; Mature: 44878
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSYSIAAPTSTQAATQANPFFADSTLPLHYPPFDKIIDSDFAPAFDVGMAEQLKEVEKI CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHHH ANQNAKPSFDNTIVALEKSGSTLDRATTVFFNLVGADTNDARKKLQADYSARFAAHRDAI HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCE SLNGKLFARIQTLYDQRTKLGLDAQGVRLVEKYDSDFVRDGAKLSDADKTTLKAMNAEPA ECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHCCCCCC NLGTTFSQNVLAEVNAAAVVVDELKQLDGLSEEQIAAAAEAAKARNLDGKYVIALLNTTG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC QPPLTQLKNRELRKKIYNASVSHGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAVYRL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCEEEEEE ENQTAKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH EKVRQANYNFDQSQVKPYFELKNVLENGVFYAANQEYGLTFKQRTDLPT HHHHHCCCCCCHHHCCHHHHHHHHHHCCEEEEECCCCCCEECCCCCCCC >Mature Secondary Structure PSYSIAAPTSTQAATQANPFFADSTLPLHYPPFDKIIDSDFAPAFDVGMAEQLKEVEKI CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHHH ANQNAKPSFDNTIVALEKSGSTLDRATTVFFNLVGADTNDARKKLQADYSARFAAHRDAI HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCE SLNGKLFARIQTLYDQRTKLGLDAQGVRLVEKYDSDFVRDGAKLSDADKTTLKAMNAEPA ECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHCCCCCC NLGTTFSQNVLAEVNAAAVVVDELKQLDGLSEEQIAAAAEAAKARNLDGKYVIALLNTTG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC QPPLTQLKNRELRKKIYNASVSHGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAVYRL CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCEEEEEE ENQTAKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH EKVRQANYNFDQSQVKPYFELKNVLENGVFYAANQEYGLTFKQRTDLPT HHHHHCCCCCCHHHCCHHHHHHHHHHCCEEEEECCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]