| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is hisB [H]
Identifier: 84623778
GI number: 84623778
Start: 2347763
End: 2348890
Strand: Direct
Name: hisB [H]
Synonym: XOO_2121
Alternate gene names: 84623778
Gene position: 2347763-2348890 (Clockwise)
Preceding gene: 84623777
Following gene: 84623779
Centisome position: 47.52
GC content: 63.03
Gene sequence:
>1128_bases ATGACCCCGATTCTCTTCGTCGACCGTGATGGCACGCTGATCACCGAGCCGGCCGACTACCAGATCGATGCGTACGAGAA ACTACGCTTCGTCGATCACGTGATTCCGGCGATGCTCAAGCTGCGTGATGCCGGCTACCAGTTCGTCATCGTCAGCAACC AGGATGGGCTGGGCAGCGAGAGCTTCCCGCGCGCCTCCTTCGACGGCCCGAACAACCTGATGCTGCAGATCTTCGCCAGC CAGGGCATCGAATTCCGCGAAGTGCTGATCGATTGCAGCTGGCCATCCGACAACGCACCCACACGCAAGCCCGGCGTCGG CTTGATGGTGCCCTATTTGCAGGACCGCACTATCGACTGGGCGCGCTCGGCGATGGTGGGCGACCGCATCACCGACATCC AGTTCGCGCAGAACCTCAATATCCGCGGGTTTCAGCTGCGCACTGACGAATTCGGCGGCGAGTGGGACTGGCCCGGCATC GCCCACGAATTGGCCGATGCGCCACGCCGTGCGGTGGTCCAGCGCAATACCAAGGAAACCAGGATCCGCGTCGAACTGGA TCTGGATCGTGTCGCCGAGCCCAAGACCGCCACCGGCTTGCCGTTCTTCGACCACATGCTGGAACAGATCGGCAAACACG GCGGCTTTGCGCTGGACATCCGTGCCGAAGGCGACCTGCATATCGATGAGCACCACACCATCGAAGACACCGGCCTTGCG CTGGGTCAGGCCCTGCGCGAAGCGCTGGGCGACAAGCGCGGCATCGGCCGCTATGGGTTCGATCCGGAAAGCAGCCCGTG GCAGGTTGCCGGCGACACCGCGCAACATGGTTTCACGTTGCCGATGGACGAAACCATCGCCAGTGCTGCGCTGGATTTCA GCGGCCGGCCGTATTTCGTGTTCGACGGCCAGTTCAAGCGCGATCGCTTGGGCGACATGCCGACCGAGCTGGTGCCGCAT TTCTTCCGCTCGATCTGCGATGCGTCCGGCGTGAACCTGCATCTGACGGTGCGCGGCGAAAACGATCACCACAAGGTCGA GGCCTGCTTCAAGGCGTTGGCGCGTGCATTGCGTCAGGCGATTCGCCGTGAGGGCAGCGCATTGCCCACCACCAAGGGCG CGCTATGA
Upstream 100 bases:
>100_bases CAGTCCCGCGCCTGTCCGACGCCTTGCGCATCACCTTGGGCACGCATGAACAGAACGAGCGCGTACTGAGCGCGCTGCAA CGCACGCAGGAGGCCGCCGC
Downstream 100 bases:
>100_bases CCGATGTTGCGCTGATCGATGCCGGTGGCGCCAATCTGGGCTCGGTGCGCTATGCATTGGAGCGACTGGGCGTTGAGGCA CGCGTGGTGCGCGATGCAGC
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD [H]
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MTPILFVDRDGTLITEPADYQIDAYEKLRFVDHVIPAMLKLRDAGYQFVIVSNQDGLGSESFPRASFDGPNNLMLQIFAS QGIEFREVLIDCSWPSDNAPTRKPGVGLMVPYLQDRTIDWARSAMVGDRITDIQFAQNLNIRGFQLRTDEFGGEWDWPGI AHELADAPRRAVVQRNTKETRIRVELDLDRVAEPKTATGLPFFDHMLEQIGKHGGFALDIRAEGDLHIDEHHTIEDTGLA LGQALREALGDKRGIGRYGFDPESSPWQVAGDTAQHGFTLPMDETIASAALDFSGRPYFVFDGQFKRDRLGDMPTELVPH FFRSICDASGVNLHLTVRGENDHHKVEACFKALARALRQAIRREGSALPTTKGAL
Sequences:
>Translated_375_residues MTPILFVDRDGTLITEPADYQIDAYEKLRFVDHVIPAMLKLRDAGYQFVIVSNQDGLGSESFPRASFDGPNNLMLQIFAS QGIEFREVLIDCSWPSDNAPTRKPGVGLMVPYLQDRTIDWARSAMVGDRITDIQFAQNLNIRGFQLRTDEFGGEWDWPGI AHELADAPRRAVVQRNTKETRIRVELDLDRVAEPKTATGLPFFDHMLEQIGKHGGFALDIRAEGDLHIDEHHTIEDTGLA LGQALREALGDKRGIGRYGFDPESSPWQVAGDTAQHGFTLPMDETIASAALDFSGRPYFVFDGQFKRDRLGDMPTELVPH FFRSICDASGVNLHLTVRGENDHHKVEACFKALARALRQAIRREGSALPTTKGAL >Mature_374_residues TPILFVDRDGTLITEPADYQIDAYEKLRFVDHVIPAMLKLRDAGYQFVIVSNQDGLGSESFPRASFDGPNNLMLQIFASQ GIEFREVLIDCSWPSDNAPTRKPGVGLMVPYLQDRTIDWARSAMVGDRITDIQFAQNLNIRGFQLRTDEFGGEWDWPGIA HELADAPRRAVVQRNTKETRIRVELDLDRVAEPKTATGLPFFDHMLEQIGKHGGFALDIRAEGDLHIDEHHTIEDTGLAL GQALREALGDKRGIGRYGFDPESSPWQVAGDTAQHGFTLPMDETIASAALDFSGRPYFVFDGQFKRDRLGDMPTELVPHF FRSICDASGVNLHLTVRGENDHHKVEACFKALARALRQAIRREGSALPTTKGAL
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI87082027, Length=372, Percent_Identity=52.9569892473118, Blast_Score=389, Evalue=1e-109, Organism=Escherichia coli, GI1786399, Length=192, Percent_Identity=30.7291666666667, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324776, Length=233, Percent_Identity=39.4849785407725, Blast_Score=168, Evalue=2e-42,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR013954 - InterPro: IPR020568 [H]
Pfam domain/function: PF00475 IGPD; PF08645 PNK3P [H]
EC number: =3.1.3.15; =4.2.1.19 [H]
Molecular weight: Translated: 41888; Mature: 41757
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00954 IGP_DEHYDRATASE_1 ; PS00955 IGP_DEHYDRATASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPILFVDRDGTLITEPADYQIDAYEKLRFVDHVIPAMLKLRDAGYQFVIVSNQDGLGSE CCCEEEEECCCCEEECCCCCEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC SFPRASFDGPNNLMLQIFASQGIEFREVLIDCSWPSDNAPTRKPGVGLMVPYLQDRTIDW CCCCCCCCCCCCEEEEEEHHCCCEEEHEEEECCCCCCCCCCCCCCCCEEECCCCCCCHHH ARSAMVGDRITDIQFAQNLNIRGFQLRTDEFGGEWDWPGIAHELADAPRRAVVQRNTKET HHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCE RIRVELDLDRVAEPKTATGLPFFDHMLEQIGKHGGFALDIRAEGDLHIDEHHTIEDTGLA EEEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCHHHHHH LGQALREALGDKRGIGRYGFDPESSPWQVAGDTAQHGFTLPMDETIASAALDFSGRPYFV HHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEE FDGQFKRDRLGDMPTELVPHFFRSICDASGVNLHLTVRGENDHHKVEACFKALARALRQA ECCCCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH IRREGSALPTTKGAL HHHCCCCCCCCCCCC >Mature Secondary Structure TPILFVDRDGTLITEPADYQIDAYEKLRFVDHVIPAMLKLRDAGYQFVIVSNQDGLGSE CCEEEEECCCCEEECCCCCEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC SFPRASFDGPNNLMLQIFASQGIEFREVLIDCSWPSDNAPTRKPGVGLMVPYLQDRTIDW CCCCCCCCCCCCEEEEEEHHCCCEEEHEEEECCCCCCCCCCCCCCCCEEECCCCCCCHHH ARSAMVGDRITDIQFAQNLNIRGFQLRTDEFGGEWDWPGIAHELADAPRRAVVQRNTKET HHHHHHCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCE RIRVELDLDRVAEPKTATGLPFFDHMLEQIGKHGGFALDIRAEGDLHIDEHHTIEDTGLA EEEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCHHHHHH LGQALREALGDKRGIGRYGFDPESSPWQVAGDTAQHGFTLPMDETIASAALDFSGRPYFV HHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEE FDGQFKRDRLGDMPTELVPHFFRSICDASGVNLHLTVRGENDHHKVEACFKALARALRQA ECCCCCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH IRREGSALPTTKGAL HHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]