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The map label for this gene is ybdL [H]

Identifier: 84623682

GI number: 84623682

Start: 2240070

End: 2241218

Strand: Direct

Name: ybdL [H]

Synonym: XOO_2025

Alternate gene names: 84623682

Gene position: 2240070-2241218 (Clockwise)

Preceding gene: 84623672

Following gene: 84623683

Centisome position: 45.34

GC content: 65.8

Gene sequence:

>1149_bases
ATGCCCCTCACGACCAAGCTGCCCAAGGTGGGCACCACCATCTTCACCGTCATGTCGCAGCTGGCGGCCGAGCACGGCGC
GGTCAATCTGGGCCAGGGCTTTCCCGATTTTGCGGTGCCGCAGCGGCTGGTCGACGAACTGACCAAGGCCATGGCGGCCG
GCCACAACCAGTACCCGCCGATGCCCGGCGTGGCGACGCTGCGCCAGGCCATCGCCGGCAAGGCGCAGCGGTGCTATGGC
GCGCAGGTCGATGCCGACACCGAGATCACCGTCACCAGCGGTGCCACCGAGGCGATCTTCAACGCCATCCACGCGGTGGT
GCGGGCGAGCGAAGACGTCATCGTGCTGGACCCGGCGTACGACTGCTACGAGCCGGCGATCGACCTGGCCGGCGCGCGTG
CGGTGCATGTGGCGCTGGATCCGCAGACCTTTGCGGTGGACTGGGATGCGCTTCGTGCTGCGATCACGCCGAAGACGCGC
CTGTTGATGATCAACTCGCCGCATAACCCGTCCGGGGCGGTGTTGTCGGCCGACGACATGCAGACGCTGACCGAACTGCT
GCGTGGCACCGAGATCTTTCTGTTGTCGGATGAGGTGTACGAACACATCGCGTTCGATGGCCGCCGGCACGAATCGGTGC
TGCGCTGGCCGGAACTGCGCGAACGCGCGTTCGTGATTTCCAGTTTCGGCAAGACCTACCACTGCACCGGCTGGAAGATC
GGCTACGCCATCGCACCGCCGGCGCTCACCGCCGAATTCCGCAAGGTGCACCAGTATAACACCTTCACCAGCTTCGGCCC
GGCCCAGCACGCCTTCGCCGCGATGATCCGCGACGAACCCGAGCACGACGAGCAACTCGGCGCGTTCTACCAGGCCAAGC
GCGATCGTTTCCGCGAACAATTGCTGACCACCCGCTTGAAGCCGTTGCCTGTGCCCGGCGGCTACTTCCAGCTGGTGGAC
TACTCGGCCATCAGCGATCTGCCCGACACCGCGTTCGTGAAGTGGCTGACCGTGGAAAAGGGCGTGGCCGCGATCCCGTT
GTCGCCGTTCTACGAGCGCGCGCCTGCAGGGCAGCGCTTGGCGCGGCTGTGCTTCGCCAAGAACGATGCGACGCTGGATG
CGGCGATCGAGCGATTGCAGAAGCTCTGA

Upstream 100 bases:

>100_bases
CGCGATGGGTCAGGGAACGCTGTTTTGCAGTGTCCGGGCGCAACCGCCTGGCGGCTTTGCGTACACTCGCGTTCCCCCGT
TTCTTGTCCGGACAGGCACC

Downstream 100 bases:

>100_bases
CGCGCCGGGATTTGGCAGTCGGGATGAGGGATTCGTAACGGCGGTTGGTCGTTTGTTGACGAGTTTGCAGAGTGCCCGAT
GACAGAAAGCTGCCCGAGCC

Product: putative aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MPLTTKLPKVGTTIFTVMSQLAAEHGAVNLGQGFPDFAVPQRLVDELTKAMAAGHNQYPPMPGVATLRQAIAGKAQRCYG
AQVDADTEITVTSGATEAIFNAIHAVVRASEDVIVLDPAYDCYEPAIDLAGARAVHVALDPQTFAVDWDALRAAITPKTR
LLMINSPHNPSGAVLSADDMQTLTELLRGTEIFLLSDEVYEHIAFDGRRHESVLRWPELRERAFVISSFGKTYHCTGWKI
GYAIAPPALTAEFRKVHQYNTFTSFGPAQHAFAAMIRDEPEHDEQLGAFYQAKRDRFREQLLTTRLKPLPVPGGYFQLVD
YSAISDLPDTAFVKWLTVEKGVAAIPLSPFYERAPAGQRLARLCFAKNDATLDAAIERLQKL

Sequences:

>Translated_382_residues
MPLTTKLPKVGTTIFTVMSQLAAEHGAVNLGQGFPDFAVPQRLVDELTKAMAAGHNQYPPMPGVATLRQAIAGKAQRCYG
AQVDADTEITVTSGATEAIFNAIHAVVRASEDVIVLDPAYDCYEPAIDLAGARAVHVALDPQTFAVDWDALRAAITPKTR
LLMINSPHNPSGAVLSADDMQTLTELLRGTEIFLLSDEVYEHIAFDGRRHESVLRWPELRERAFVISSFGKTYHCTGWKI
GYAIAPPALTAEFRKVHQYNTFTSFGPAQHAFAAMIRDEPEHDEQLGAFYQAKRDRFREQLLTTRLKPLPVPGGYFQLVD
YSAISDLPDTAFVKWLTVEKGVAAIPLSPFYERAPAGQRLARLCFAKNDATLDAAIERLQKL
>Mature_381_residues
PLTTKLPKVGTTIFTVMSQLAAEHGAVNLGQGFPDFAVPQRLVDELTKAMAAGHNQYPPMPGVATLRQAIAGKAQRCYGA
QVDADTEITVTSGATEAIFNAIHAVVRASEDVIVLDPAYDCYEPAIDLAGARAVHVALDPQTFAVDWDALRAAITPKTRL
LMINSPHNPSGAVLSADDMQTLTELLRGTEIFLLSDEVYEHIAFDGRRHESVLRWPELRERAFVISSFGKTYHCTGWKIG
YAIAPPALTAEFRKVHQYNTFTSFGPAQHAFAAMIRDEPEHDEQLGAFYQAKRDRFREQLLTTRLKPLPVPGGYFQLVDY
SAISDLPDTAFVKWLTVEKGVAAIPLSPFYERAPAGQRLARLCFAKNDATLDAAIERLQKL

Specific function: Shows aminotransferase activity with methionine and histidine as substrates, and to a lesser extent also with phenylalanine [H]

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=404, Percent_Identity=34.4059405940594, Blast_Score=241, Evalue=6e-64,
Organism=Homo sapiens, GI56713256, Length=404, Percent_Identity=34.4059405940594, Blast_Score=241, Evalue=7e-64,
Organism=Homo sapiens, GI95147551, Length=396, Percent_Identity=33.5858585858586, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI169881279, Length=396, Percent_Identity=33.5858585858586, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI169881281, Length=394, Percent_Identity=30.4568527918782, Blast_Score=179, Evalue=6e-45,
Organism=Homo sapiens, GI4507369, Length=207, Percent_Identity=25.1207729468599, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1786816, Length=378, Percent_Identity=54.7619047619048, Blast_Score=403, Evalue=1e-114,
Organism=Escherichia coli, GI1788722, Length=301, Percent_Identity=24.5847176079734, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1788627, Length=220, Percent_Identity=27.7272727272727, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787710, Length=281, Percent_Identity=29.1814946619217, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71994472, Length=404, Percent_Identity=34.1584158415842, Blast_Score=222, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI71994476, Length=404, Percent_Identity=34.1584158415842, Blast_Score=221, Evalue=5e-58,
Organism=Caenorhabditis elegans, GI17567369, Length=402, Percent_Identity=31.0945273631841, Blast_Score=188, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6322401, Length=389, Percent_Identity=31.8766066838046, Blast_Score=192, Evalue=6e-50,
Organism=Drosophila melanogaster, GI28573069, Length=393, Percent_Identity=32.5699745547074, Blast_Score=204, Evalue=9e-53,
Organism=Drosophila melanogaster, GI24646114, Length=393, Percent_Identity=32.5699745547074, Blast_Score=204, Evalue=9e-53,
Organism=Drosophila melanogaster, GI28573067, Length=393, Percent_Identity=32.5699745547074, Blast_Score=204, Evalue=9e-53,
Organism=Drosophila melanogaster, GI28573065, Length=393, Percent_Identity=32.5699745547074, Blast_Score=204, Evalue=9e-53,
Organism=Drosophila melanogaster, GI18859735, Length=343, Percent_Identity=25.3644314868805, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 42067; Mature: 41936

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTTKLPKVGTTIFTVMSQLAAEHGAVNLGQGFPDFAVPQRLVDELTKAMAAGHNQYPP
CCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
MPGVATLRQAIAGKAQRCYGAQVDADTEITVTSGATEAIFNAIHAVVRASEDVIVLDPAY
CCCHHHHHHHHHCHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH
DCYEPAIDLAGARAVHVALDPQTFAVDWDALRAAITPKTRLLMINSPHNPSGAVLSADDM
HHHHHHHHHCCCEEEEEEECCCEEEEEHHHHHHHCCCCEEEEEEECCCCCCCCEEECHHH
QTLTELLRGTEIFLLSDEVYEHIAFDGRRHESVLRWPELRERAFVISSFGKTYHCTGWKI
HHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEE
GYAIAPPALTAEFRKVHQYNTFTSFGPAQHAFAAMIRDEPEHDEQLGAFYQAKRDRFREQ
CEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LLTTRLKPLPVPGGYFQLVDYSAISDLPDTAFVKWLTVEKGVAAIPLSPFYERAPAGQRL
HHHHCCCCCCCCCCCEEEEEHHHHHCCCCHHHEEEEEECCCCEECCCCHHHHHCCCHHHH
ARLCFAKNDATLDAAIERLQKL
HHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PLTTKLPKVGTTIFTVMSQLAAEHGAVNLGQGFPDFAVPQRLVDELTKAMAAGHNQYPP
CCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
MPGVATLRQAIAGKAQRCYGAQVDADTEITVTSGATEAIFNAIHAVVRASEDVIVLDPAY
CCCHHHHHHHHHCHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH
DCYEPAIDLAGARAVHVALDPQTFAVDWDALRAAITPKTRLLMINSPHNPSGAVLSADDM
HHHHHHHHHCCCEEEEEEECCCEEEEEHHHHHHHCCCCEEEEEEECCCCCCCCEEECHHH
QTLTELLRGTEIFLLSDEVYEHIAFDGRRHESVLRWPELRERAFVISSFGKTYHCTGWKI
HHHHHHHCCCEEEEECHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEE
GYAIAPPALTAEFRKVHQYNTFTSFGPAQHAFAAMIRDEPEHDEQLGAFYQAKRDRFREQ
CEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LLTTRLKPLPVPGGYFQLVDYSAISDLPDTAFVKWLTVEKGVAAIPLSPFYERAPAGQRL
HHHHCCCCCCCCCCCEEEEEHHHHHCCCCHHHEEEEEECCCCEECCCCHHHHHCCCHHHH
ARLCFAKNDATLDAAIERLQKL
HHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]