| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is glnD [H]
Identifier: 84623532
GI number: 84623532
Start: 2066295
End: 2068904
Strand: Direct
Name: glnD [H]
Synonym: XOO_1875
Alternate gene names: 84623532
Gene position: 2066295-2068904 (Clockwise)
Preceding gene: 84623531
Following gene: 162319802
Centisome position: 41.83
GC content: 66.28
Gene sequence:
>2610_bases ATGACGGACGCGCCGGCGGAGCGACCCGACCCAAGCGTCGCCGGCGACGCGGACTGGGCCGCACAGGCCCGTCCGCTGCT GGTGCATGCGGACATGCGGTTGCGCAAACGCTTCGACCAAGGCGAACCGATCGAGCGGCTGGTGGCGCTGCGCGCACGCG CGGTCGATCAATTGATGCGCAACGCCTGGACCCGCTGCATCCCGGCCGACAGTGGCCTGTCGCTGCACGCGGTGGGCGGC TACGGGCGCGGTGAGCTATTCCCGCGCTCGGACGTGGACGTGTTGGTGCTGGGCGATAGCGTGGCCCAGCAACGGCATGA GCAACACCTGTCGCGCTTGTTCGCGTTGCTGTGGGATGTGGGGCTGCCGATCAGCCACGCGGTGCGCTCGCCGACGCAGT GCATGGTGGCGGCGGCCGATCAGACCGTGCTTACCGCCTTGATCGAATCGCGGGCCCTGGTGGCCGATGCCGCTGCGCGC GCTGCATTGGCGGCGGCCATCGCGCCGCAACGCGTATGGCCGCCGCGCGATTTCTTCCAGGCCAAGCGCGAGGAATTGCT GGCGCGCCACCAACGCTTCGGCGACACCGCGGACAATCTCGAACCCGACATCAAGGACGGCCCAGGCGGTTTGCGCGATT TGCAGACATTGGGTTGTATGGCCTTGCGTGCGTTCGGAGTCAAGGACGTGGAGGCATTGGTCGGGCTGGGCCATGTCGGC TGCGACGAAGCCGCCGCGTTGCGTCGCGAGCGCGAAGAACTGGCCCGCCTGCGGTTTGGTCTGCACATCGTGGCCAACCG GCCGGAAGAGCGCCTGCGTTTCGATTATCAAAAGACCCTCGCCGAACGGCTGGGGTTTGCCGACGACCTGGAAAGCCTGG GCGTGGAAAAAATGATGCAGCGCTTTTATCGCAGCGCTGCGTTGATCCGCCGCATCAGCGACCGTCTGCTACAGCGCTTT GAAGAACAGTTCGATGGCGAAGCGACACCGGAATCGCTGGGTGGCGGCTTCAGCCTACGTCGCGGCTATCTGGCTGCCGA CTCGGACAGCTGGCCGGGCGACGATGTGTTGCAGGTGTTTGCACTGTTCGTGCACTGGGCGGCACATCGCGAGGTGCGCG GCCTGCATTCGTTGACTGCGCGCGCGCTGGCCGAGGTGCTGCGCGAGTTTCCGGCGTACGACGTTGCCGATGCCACCGCC CGCGAGCTCTTCATGGCGCTGCTGCGCGGCACGCGTGCGGTGGAAACGCTTAATCGCATGGCGCGGCTGGGCGTGTTGGG CCAGTGGATTCCGGCATTCGCCAGCGTCTCCGGGCGCATGCAGTTCGACCTGTTCCATGTCTATACGGTGGATCAGCACA CATTGATGGTGTTGCGGAACATCGCGCTGTTTGCCGCTGGCCGCGCCGATGAGCGTTTCTCGATTGCGCATGAAGTCTGG CCGCGTCTGCGCAAGCCGGAACTGCTACTGCTGGCCGGGCTGTTTCACGATATCGCCAAGGGCCGTGGCGGCGATCATTC CGAATTGGGTGCGGTGGATACGCGCGCGTTCTGCCTGGCGCATCGCCTGAGCGAAGGCGATACCGAACTGGTCACCTGGC TGGTGGAGCAGCACCTGCGCATGTCGGTCACCGCGCAGAAGCAGGACATCTCCGACCCGGAAGTGATCCACCGTTTCGCC ACGTTGGTCGGCACACGCGAGCGTCTGGATTATCTGTATCTGCTGACCTGCGCCGACATCGCCGGCACCAGTCCCAAGTT GTGGAATGCATGGAAAGACCGCTTGTTGGCGGATCTGTATTTCGCCGCGCGTCGCGCCTTGCGCGAAGGGGTGGAACATC CGCCGCCGCGCGAGGAGCGCCTGCGCGAAGCGCGCGAATCCGCGCGTGCGCTGATGCAGGCGCAAGGGCATGACGATGCC ACCATCGACCGGCAATTCGCCGGCATGCCGGACGAGAACTTCCTGCGCTTCCGTCCCGAGCAACTGGCCTGGCAGGCGGC GTCGCTGATCGAAGTGGAGATCGCCCAGACCCTGGTCAAGGCACGGCGCGCGGTGCCTGACAACGATGCACTGGAAGTGT TCGTGTATTCGCCCGACCGCGATGGGCTGTTTGCGGCCATCGTCGCCACTCTCGATCGCAAGGGCTACGGTATTCACCGT GCACGCGTGCTGGACGCGCCACACGATGCGATCTTCGACGTGTTCGAAGTGCTGCCGCGGGACACCTACGCCGATGGCGA CCCGCAGCGGCTGGCAGCAACGCTGCGCCAGGTGCTGGCCGGCGACCTGCAGCAGGTGCGGCCGGCACGGCGTGCAGTGC CGGGCCAGTTGCGGCATTTCCGCTTCGCACCGCGGGTGGAATTCAGCGAAAGCGCCGATGGCCGACGCACCCGCATCAGC CTGGTCGCACCCGATCGCCCCGGCCTGCTGGCCGATGTGGCGCACGTATTGCGCGTGCAGCACCTGCGCGTGCACGACGC GCGCATCGCCACCTTCGGCGAGCGTGCCGAAGACCAGTTCCAGATCACCGACGAGCACGACCGCCCGTTGTCCGAATCCG CCCGGCAGGCCCTGCGCGATGCACTGTGCGCCTGCCTCGACCCTGTCTAG
Upstream 100 bases:
>100_bases CCAAGGACCGCAAGTTGTCCGCACAGTGGGAACACATGGTGGCGGTGACCGAAGACGGCGTGGATGTGCTGACGCTGTCG GCCAATTCGCCCGCGCCGGT
Downstream 100 bases:
>100_bases CACTCCGGAGACCCCCATGGCCACCAGCAAGAAGACCGCGCCCAAGCAGAGCGCGACCACCAACAAGGCAACGTCCAAGC CCACGCGCGCAACGCGTGGC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 869; Mature: 868
Protein sequence:
>869_residues MTDAPAERPDPSVAGDADWAAQARPLLVHADMRLRKRFDQGEPIERLVALRARAVDQLMRNAWTRCIPADSGLSLHAVGG YGRGELFPRSDVDVLVLGDSVAQQRHEQHLSRLFALLWDVGLPISHAVRSPTQCMVAAADQTVLTALIESRALVADAAAR AALAAAIAPQRVWPPRDFFQAKREELLARHQRFGDTADNLEPDIKDGPGGLRDLQTLGCMALRAFGVKDVEALVGLGHVG CDEAAALRREREELARLRFGLHIVANRPEERLRFDYQKTLAERLGFADDLESLGVEKMMQRFYRSAALIRRISDRLLQRF EEQFDGEATPESLGGGFSLRRGYLAADSDSWPGDDVLQVFALFVHWAAHREVRGLHSLTARALAEVLREFPAYDVADATA RELFMALLRGTRAVETLNRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVW PRLRKPELLLLAGLFHDIAKGRGGDHSELGAVDTRAFCLAHRLSEGDTELVTWLVEQHLRMSVTAQKQDISDPEVIHRFA TLVGTRERLDYLYLLTCADIAGTSPKLWNAWKDRLLADLYFAARRALREGVEHPPPREERLREARESARALMQAQGHDDA TIDRQFAGMPDENFLRFRPEQLAWQAASLIEVEIAQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHR ARVLDAPHDAIFDVFEVLPRDTYADGDPQRLAATLRQVLAGDLQQVRPARRAVPGQLRHFRFAPRVEFSESADGRRTRIS LVAPDRPGLLADVAHVLRVQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLDPV
Sequences:
>Translated_869_residues MTDAPAERPDPSVAGDADWAAQARPLLVHADMRLRKRFDQGEPIERLVALRARAVDQLMRNAWTRCIPADSGLSLHAVGG YGRGELFPRSDVDVLVLGDSVAQQRHEQHLSRLFALLWDVGLPISHAVRSPTQCMVAAADQTVLTALIESRALVADAAAR AALAAAIAPQRVWPPRDFFQAKREELLARHQRFGDTADNLEPDIKDGPGGLRDLQTLGCMALRAFGVKDVEALVGLGHVG CDEAAALRREREELARLRFGLHIVANRPEERLRFDYQKTLAERLGFADDLESLGVEKMMQRFYRSAALIRRISDRLLQRF EEQFDGEATPESLGGGFSLRRGYLAADSDSWPGDDVLQVFALFVHWAAHREVRGLHSLTARALAEVLREFPAYDVADATA RELFMALLRGTRAVETLNRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVW PRLRKPELLLLAGLFHDIAKGRGGDHSELGAVDTRAFCLAHRLSEGDTELVTWLVEQHLRMSVTAQKQDISDPEVIHRFA TLVGTRERLDYLYLLTCADIAGTSPKLWNAWKDRLLADLYFAARRALREGVEHPPPREERLREARESARALMQAQGHDDA TIDRQFAGMPDENFLRFRPEQLAWQAASLIEVEIAQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHR ARVLDAPHDAIFDVFEVLPRDTYADGDPQRLAATLRQVLAGDLQQVRPARRAVPGQLRHFRFAPRVEFSESADGRRTRIS LVAPDRPGLLADVAHVLRVQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLDPV >Mature_868_residues TDAPAERPDPSVAGDADWAAQARPLLVHADMRLRKRFDQGEPIERLVALRARAVDQLMRNAWTRCIPADSGLSLHAVGGY GRGELFPRSDVDVLVLGDSVAQQRHEQHLSRLFALLWDVGLPISHAVRSPTQCMVAAADQTVLTALIESRALVADAAARA ALAAAIAPQRVWPPRDFFQAKREELLARHQRFGDTADNLEPDIKDGPGGLRDLQTLGCMALRAFGVKDVEALVGLGHVGC DEAAALRREREELARLRFGLHIVANRPEERLRFDYQKTLAERLGFADDLESLGVEKMMQRFYRSAALIRRISDRLLQRFE EQFDGEATPESLGGGFSLRRGYLAADSDSWPGDDVLQVFALFVHWAAHREVRGLHSLTARALAEVLREFPAYDVADATAR ELFMALLRGTRAVETLNRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVWP RLRKPELLLLAGLFHDIAKGRGGDHSELGAVDTRAFCLAHRLSEGDTELVTWLVEQHLRMSVTAQKQDISDPEVIHRFAT LVGTRERLDYLYLLTCADIAGTSPKLWNAWKDRLLADLYFAARRALREGVEHPPPREERLREARESARALMQAQGHDDAT IDRQFAGMPDENFLRFRPEQLAWQAASLIEVEIAQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRA RVLDAPHDAIFDVFEVLPRDTYADGDPQRLAATLRQVLAGDLQQVRPARRAVPGQLRHFRFAPRVEFSESADGRRTRISL VAPDRPGLLADVAHVLRVQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLDPV
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=851, Percent_Identity=39.1304347826087, Blast_Score=544, Evalue=1e-156,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 97351; Mature: 97220
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAPAERPDPSVAGDADWAAQARPLLVHADMRLRKRFDQGEPIERLVALRARAVDQLMR CCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH NAWTRCIPADSGLSLHAVGGYGRGELFPRSDVDVLVLGDSVAQQRHEQHLSRLFALLWDV HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHC GLPISHAVRSPTQCMVAAADQTVLTALIESRALVADAAARAALAAAIAPQRVWPPRDFFQ CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH AKREELLARHQRFGDTADNLEPDIKDGPGGLRDLQTLGCMALRAFGVKDVEALVGLGHVG HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC CDEAAALRREREELARLRFGLHIVANRPEERLRFDYQKTLAERLGFADDLESLGVEKMMQ CCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH RFYRSAALIRRISDRLLQRFEEQFDGEATPESLGGGFSLRRGYLAADSDSWPGDDVLQVF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCEEECCCCCCCCHHHHHHH ALFVHWAAHREVRGLHSLTARALAEVLREFPAYDVADATARELFMALLRGTRAVETLNRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH ARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVW HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH PRLRKPELLLLAGLFHDIAKGRGGDHSELGAVDTRAFCLAHRLSEGDTELVTWLVEQHLR HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH MSVTAQKQDISDPEVIHRFATLVGTRERLDYLYLLTCADIAGTSPKLWNAWKDRLLADLY HHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHEEEHHHHCCCCCHHHHHHHHHHHHHHH FAARRALREGVEHPPPREERLREARESARALMQAQGHDDATIDRQFAGMPDENFLRFRPE HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHCCHH QLAWQAASLIEVEIAQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEH ARVLDAPHDAIFDVFEVLPRDTYADGDPQRLAATLRQVLAGDLQQVRPARRAVPGQLRHF HHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHH RFAPRVEFSESADGRRTRISLVAPDRPGLLADVAHVLRVQHLRVHDARIATFGERAEDQF CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE QITDEHDRPLSESARQALRDALCACLDPV EECCCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TDAPAERPDPSVAGDADWAAQARPLLVHADMRLRKRFDQGEPIERLVALRARAVDQLMR CCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH NAWTRCIPADSGLSLHAVGGYGRGELFPRSDVDVLVLGDSVAQQRHEQHLSRLFALLWDV HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHC GLPISHAVRSPTQCMVAAADQTVLTALIESRALVADAAARAALAAAIAPQRVWPPRDFFQ CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH AKREELLARHQRFGDTADNLEPDIKDGPGGLRDLQTLGCMALRAFGVKDVEALVGLGHVG HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC CDEAAALRREREELARLRFGLHIVANRPEERLRFDYQKTLAERLGFADDLESLGVEKMMQ CCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH RFYRSAALIRRISDRLLQRFEEQFDGEATPESLGGGFSLRRGYLAADSDSWPGDDVLQVF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCEEECCCCCCCCHHHHHHH ALFVHWAAHREVRGLHSLTARALAEVLREFPAYDVADATARELFMALLRGTRAVETLNRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH ARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTLMVLRNIALFAAGRADERFSIAHEVW HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH PRLRKPELLLLAGLFHDIAKGRGGDHSELGAVDTRAFCLAHRLSEGDTELVTWLVEQHLR HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH MSVTAQKQDISDPEVIHRFATLVGTRERLDYLYLLTCADIAGTSPKLWNAWKDRLLADLY HHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHEEEHHHHCCCCCHHHHHHHHHHHHHHH FAARRALREGVEHPPPREERLREARESARALMQAQGHDDATIDRQFAGMPDENFLRFRPE HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHCCHH QLAWQAASLIEVEIAQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEH ARVLDAPHDAIFDVFEVLPRDTYADGDPQRLAATLRQVLAGDLQQVRPARRAVPGQLRHF HHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHH RFAPRVEFSESADGRRTRISLVAPDRPGLLADVAHVLRVQHLRVHDARIATFGERAEDQF CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE QITDEHDRPLSESARQALRDALCACLDPV EECCCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]