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The map label for this gene is algU [H]

Identifier: 84623402

GI number: 84623402

Start: 1929040

End: 1929660

Strand: Direct

Name: algU [H]

Synonym: XOO_1745

Alternate gene names: 84623402

Gene position: 1929040-1929660 (Clockwise)

Preceding gene: 84623400

Following gene: 84623403

Centisome position: 39.05

GC content: 62.0

Gene sequence:

>621_bases
ATGGCCGAAGTCGATACACCTCAGGAGCTGGACCTGGAACTGGTCCGGCGCGTGCAGCGCGGCGAAAGCGCGGCGTTCGA
TGTGCTGGTGCGCAAATACCAGCATCGGATCGTTGCGTTGATCGGGCGCTACATCGCCGACTGGAGCGAATGCCAGGACG
TTGCCCAGGACACGTTTGTGCGGGCGTACCGCGCGATCAACAGTTTTCGTGGCGACGCCCAGTTCTATACGTGGCTGCAC
CGCATTGCCGTCAACACTGCCAAGAACCATCTGGTTGCGCATAACCACCGCCCGCCCAGCGACGACATCGAGATCAGCGA
TGCCGAACACTTCGATGGAGCGACCCGGTTGCGCGACACCGACACCCCGGAGCGCGAATTGATGCGACAGGAGCTGGAAC
AAACGGTGGATGCGCGCGGTACAAGCACTGCCGGAAGAACTTCGATCGGGCATCACCCTGCGCGAGGTGAAGGGCTGAGC
TATGAGGACATCGCGCGAAAGATGGATTGCCCGATCGGAACGGTGCGCTCGCGCATCTTCCGGGCGCGTGAGGCCATCGA
CATCAAGCTGCGGCCTCTGCTGGAGACCGAGAGCGCTACCCGTGAGCGATACCGTGTATGA

Upstream 100 bases:

>100_bases
TACCCTGATGCGTGACGGTCGTACGGATCGGTATGAACTTTTCTTTTCAATGGCGGTCTCATTGCCCGACTTCGGTGGGC
TGACGAGAGTGCGGCCCGAC

Downstream 100 bases:

>100_bases
GCCATAACACCGACATGTCCACCACCGACAAGTTCGAGCTTCACTATCGCCAGCAGCTGTCTGCGTTGGTCGACGGCGAA
TTGAGTGCCGACGCGTCGCG

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAEVDTPQELDLELVRRVQRGESAAFDVLVRKYQHRIVALIGRYIADWSECQDVAQDTFVRAYRAINSFRGDAQFYTWLH
RIAVNTAKNHLVAHNHRPPSDDIEISDAEHFDGATRLRDTDTPERELMRQELEQTVDARGTSTAGRTSIGHHPARGEGLS
YEDIARKMDCPIGTVRSRIFRAREAIDIKLRPLLETESATRERYRV

Sequences:

>Translated_206_residues
MAEVDTPQELDLELVRRVQRGESAAFDVLVRKYQHRIVALIGRYIADWSECQDVAQDTFVRAYRAINSFRGDAQFYTWLH
RIAVNTAKNHLVAHNHRPPSDDIEISDAEHFDGATRLRDTDTPERELMRQELEQTVDARGTSTAGRTSIGHHPARGEGLS
YEDIARKMDCPIGTVRSRIFRAREAIDIKLRPLLETESATRERYRV
>Mature_205_residues
AEVDTPQELDLELVRRVQRGESAAFDVLVRKYQHRIVALIGRYIADWSECQDVAQDTFVRAYRAINSFRGDAQFYTWLHR
IAVNTAKNHLVAHNHRPPSDDIEISDAEHFDGATRLRDTDTPERELMRQELEQTVDARGTSTAGRTSIGHHPARGEGLSY
EDIARKMDCPIGTVRSRIFRAREAIDIKLRPLLETESATRERYRV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=187, Percent_Identity=49.7326203208556, Blast_Score=192, Evalue=1e-50,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23686; Mature: 23555

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEVDTPQELDLELVRRVQRGESAAFDVLVRKYQHRIVALIGRYIADWSECQDVAQDTFV
CCCCCCCHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RAYRAINSFRGDAQFYTWLHRIAVNTAKNHLVAHNHRPPSDDIEISDAEHFDGATRLRDT
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHCCCHHHCCCC
DTPERELMRQELEQTVDARGTSTAGRTSIGHHPARGEGLSYEDIARKMDCPIGTVRSRIF
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
RAREAIDIKLRPLLETESATRERYRV
HHHHHHHHEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEVDTPQELDLELVRRVQRGESAAFDVLVRKYQHRIVALIGRYIADWSECQDVAQDTFV
CCCCCCHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
RAYRAINSFRGDAQFYTWLHRIAVNTAKNHLVAHNHRPPSDDIEISDAEHFDGATRLRDT
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHCCCHHHCCCC
DTPERELMRQELEQTVDARGTSTAGRTSIGHHPARGEGLSYEDIARKMDCPIGTVRSRIF
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
RAREAIDIKLRPLLETESATRERYRV
HHHHHHHHEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]