| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is czcD [H]
Identifier: 84623400
GI number: 84623400
Start: 1925540
End: 1926505
Strand: Direct
Name: czcD [H]
Synonym: XOO_1743
Alternate gene names: 84623400
Gene position: 1925540-1926505 (Clockwise)
Preceding gene: 84623399
Following gene: 84623402
Centisome position: 38.98
GC content: 65.42
Gene sequence:
>966_bases ATGGGACACGACCACAACCACGCACCCAGCGAAATTCGCCATGAAACACCCTTGTGGTGGGCGCTGGGCCTGACCGCCAC GTTCCTGTTGGCAGAGATCATCGGCGCGTTCGTGACCAACAGCCTGGCGCTGTTGTCCGACGCCGCCCATATGGCCACCG ACACCGTCGGCCTGATGATCGCGTTGGTCGCGGTGCGCTTGAGCCGTCGCCCGGCTGACGCGCGTCGCACGTATGGCTAT GTGCGGCTCGAAGCGCTCGGCGCGTTGGCCAATGGCGCGCTGCTGTTCGCAGTGGGCGGCTACATCCTGTGGGAGGCCGC GCAGCGCGTTCGCGCCCCGCAGGACATTGCGTATGGCGGCATGCTGCTGATCGCCGGCTTCGGCCTGGTGATCAATCTGA TCGCAATGAAGCTGCTGCATGCCGGCAGCGGCGAAAGCCTCAACGTCAAAGGCGCCTATCTGGAGGTCTGGAGCGACATG CTCGGATCGATGGCGGTGATCATCGGTGCCTTGCTGATCCACTGGACCAGCTGGCAGTGGATCGACCCGGTGCTGGCCGT GCTGATCGGCCTGTGGGTATTGCCGCGCACCTGGGTGCTGCTGCGCGAGGCGATCAACGTGTTGCTCGAGGGCGTGCCCA AGGGTATCGATCTGGCCCAGGTGCAGCAGGCACTCACCAGCCATCCCGGCGTCGAAGACGTGCACGACCTACACGTCTGG GCGCTGGCCTCCAGCACCCCTGCGCTCACCGCGCACATTGTCGTCAACGAGGCAACCGACCGCGACCGCCTGCGCGACGC GCTCGCCACCCTGCTGCACGACCGCTTCGACATCGTCCATGTCACCCTGCAGGTGGAAAGCGGCGACTGCGGCACCGAGC CTTGCGGCACACCAAAGCCCGCTGCAGACGCTGGCCATGACGCGCATCATGGGCACAGTCATGCGCATGGGCACTCCCAT CATTAA
Upstream 100 bases:
>100_bases CCGCATGACGCGTGTGATGTGATGTCATCACATGCAGGTGTAATAGTCTCCGCCATCGCGTGCGGCTAAGGTGCGCGCAT CGCACGAGACGACGACCTCC
Downstream 100 bases:
>100_bases CCTCTGGTGGGAGCAGGTCGGCGGGGCATCGAATTAGCGCGTTTCGACCTGCACCATCAACAGGAAGCGGGAGGCCCTGG CGCGACATATCCAGATCGAT
Product: cobalt-zinc-cadmium resistance protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MGHDHNHAPSEIRHETPLWWALGLTATFLLAEIIGAFVTNSLALLSDAAHMATDTVGLMIALVAVRLSRRPADARRTYGY VRLEALGALANGALLFAVGGYILWEAAQRVRAPQDIAYGGMLLIAGFGLVINLIAMKLLHAGSGESLNVKGAYLEVWSDM LGSMAVIIGALLIHWTSWQWIDPVLAVLIGLWVLPRTWVLLREAINVLLEGVPKGIDLAQVQQALTSHPGVEDVHDLHVW ALASSTPALTAHIVVNEATDRDRLRDALATLLHDRFDIVHVTLQVESGDCGTEPCGTPKPAADAGHDAHHGHSHAHGHSH H
Sequences:
>Translated_321_residues MGHDHNHAPSEIRHETPLWWALGLTATFLLAEIIGAFVTNSLALLSDAAHMATDTVGLMIALVAVRLSRRPADARRTYGY VRLEALGALANGALLFAVGGYILWEAAQRVRAPQDIAYGGMLLIAGFGLVINLIAMKLLHAGSGESLNVKGAYLEVWSDM LGSMAVIIGALLIHWTSWQWIDPVLAVLIGLWVLPRTWVLLREAINVLLEGVPKGIDLAQVQQALTSHPGVEDVHDLHVW ALASSTPALTAHIVVNEATDRDRLRDALATLLHDRFDIVHVTLQVESGDCGTEPCGTPKPAADAGHDAHHGHSHAHGHSH H >Mature_320_residues GHDHNHAPSEIRHETPLWWALGLTATFLLAEIIGAFVTNSLALLSDAAHMATDTVGLMIALVAVRLSRRPADARRTYGYV RLEALGALANGALLFAVGGYILWEAAQRVRAPQDIAYGGMLLIAGFGLVINLIAMKLLHAGSGESLNVKGAYLEVWSDML GSMAVIIGALLIHWTSWQWIDPVLAVLIGLWVLPRTWVLLREAINVLLEGVPKGIDLAQVQQALTSHPGVEDVHDLHVWA LASSTPALTAHIVVNEATDRDRLRDALATLLHDRFDIVHVTLQVESGDCGTEPCGTPKPAADAGHDAHHGHSHAHGHSHH
Specific function: Necessary for activation of the czc determinant [H]
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. SLC30A subfamily [H]
Homologues:
Organism=Homo sapiens, GI52352805, Length=315, Percent_Identity=30.4761904761905, Blast_Score=170, Evalue=1e-42, Organism=Homo sapiens, GI21361112, Length=304, Percent_Identity=30.2631578947368, Blast_Score=140, Evalue=2e-33, Organism=Homo sapiens, GI289803013, Length=295, Percent_Identity=28.135593220339, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI289803009, Length=295, Percent_Identity=28.135593220339, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI289803007, Length=295, Percent_Identity=28.135593220339, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI289803003, Length=295, Percent_Identity=28.135593220339, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI64762489, Length=295, Percent_Identity=28.135593220339, Blast_Score=129, Evalue=5e-30, Organism=Homo sapiens, GI21359890, Length=334, Percent_Identity=26.6467065868263, Blast_Score=125, Evalue=5e-29, Organism=Homo sapiens, GI14210520, Length=234, Percent_Identity=30.3418803418803, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI20070323, Length=315, Percent_Identity=26.031746031746, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI52351208, Length=157, Percent_Identity=33.1210191082803, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI52352803, Length=232, Percent_Identity=26.2931034482759, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI222080086, Length=119, Percent_Identity=32.7731092436975, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI40255009, Length=119, Percent_Identity=32.7731092436975, Blast_Score=76, Evalue=5e-14, Organism=Escherichia coli, GI1786966, Length=280, Percent_Identity=42.8571428571429, Blast_Score=188, Evalue=3e-49, Organism=Escherichia coli, GI1790349, Length=245, Percent_Identity=24.0816326530612, Blast_Score=65, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193210990, Length=323, Percent_Identity=31.5789473684211, Blast_Score=171, Evalue=7e-43, Organism=Caenorhabditis elegans, GI17555794, Length=323, Percent_Identity=32.5077399380805, Blast_Score=167, Evalue=7e-42, Organism=Caenorhabditis elegans, GI17555796, Length=312, Percent_Identity=33.0128205128205, Blast_Score=165, Evalue=4e-41, Organism=Caenorhabditis elegans, GI32564488, Length=295, Percent_Identity=29.4915254237288, Blast_Score=124, Evalue=9e-29, Organism=Caenorhabditis elegans, GI17550440, Length=120, Percent_Identity=35.8333333333333, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17550442, Length=120, Percent_Identity=35.8333333333333, Blast_Score=78, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6320411, Length=173, Percent_Identity=30.0578034682081, Blast_Score=86, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6323899, Length=128, Percent_Identity=39.84375, Blast_Score=86, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6324892, Length=126, Percent_Identity=38.8888888888889, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI24583858, Length=337, Percent_Identity=30.2670623145401, Blast_Score=152, Evalue=3e-37, Organism=Drosophila melanogaster, GI24656728, Length=323, Percent_Identity=29.4117647058824, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI24656724, Length=323, Percent_Identity=29.4117647058824, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI24656720, Length=323, Percent_Identity=29.4117647058824, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI24656715, Length=323, Percent_Identity=29.4117647058824, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI21357035, Length=323, Percent_Identity=29.4117647058824, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI28574430, Length=151, Percent_Identity=31.7880794701987, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24584409, Length=151, Percent_Identity=31.7880794701987, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24585900, Length=125, Percent_Identity=37.6, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24585898, Length=125, Percent_Identity=37.6, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24585896, Length=125, Percent_Identity=37.6, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI19921672, Length=125, Percent_Identity=37.6, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24645863, Length=110, Percent_Identity=32.7272727272727, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 34610; Mature: 34479
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHDHNHAPSEIRHETPLWWALGLTATFLLAEIIGAFVTNSLALLSDAAHMATDTVGLMI CCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALVAVRLSRRPADARRTYGYVRLEALGALANGALLFAVGGYILWEAAQRVRAPQDIAYGG HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH MLLIAGFGLVINLIAMKLLHAGSGESLNVKGAYLEVWSDMLGSMAVIIGALLIHWTSWQW HHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH IDPVLAVLIGLWVLPRTWVLLREAINVLLEGVPKGIDLAQVQQALTSHPGVEDVHDLHVW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHEE ALASSTPALTAHIVVNEATDRDRLRDALATLLHDRFDIVHVTLQVESGDCGTEPCGTPKP EEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC AADAGHDAHHGHSHAHGHSHH CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GHDHNHAPSEIRHETPLWWALGLTATFLLAEIIGAFVTNSLALLSDAAHMATDTVGLMI CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALVAVRLSRRPADARRTYGYVRLEALGALANGALLFAVGGYILWEAAQRVRAPQDIAYGG HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH MLLIAGFGLVINLIAMKLLHAGSGESLNVKGAYLEVWSDMLGSMAVIIGALLIHWTSWQW HHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH IDPVLAVLIGLWVLPRTWVLLREAINVLLEGVPKGIDLAQVQQALTSHPGVEDVHDLHVW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHEE ALASSTPALTAHIVVNEATDRDRLRDALATLLHDRFDIVHVTLQVESGDCGTEPCGTPKP EEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC AADAGHDAHHGHSHAHGHSHH CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8829543 [H]