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The map label for this gene is rraA [C]

Identifier: 84623100

GI number: 84623100

Start: 1571226

End: 1571726

Strand: Direct

Name: rraA [C]

Synonym: XOO_1443

Alternate gene names: 84623100

Gene position: 1571226-1571726 (Clockwise)

Preceding gene: 84623097

Following gene: 84623101

Centisome position: 31.8

GC content: 67.86

Gene sequence:

>501_bases
ATGACCTGGACCACGCCTGATCTGTGTGACCGCTACCCCGAGGTGACGATTGCCGAGCCGCCGTTTCGCCATTTCGGCGG
GCGCACCGTGTTCTGCGGGCCGATGGTCACGGTGCGTTGTTTCGAAGATAACTCGCGGATGCGCGAGCTGGCCGCCACGC
CGGGCGATGCCCGGGTGCTGGTGGTGGACGGCCAGGGCTCGCTGAAGCATGCGCTGCTGGGCGACCAGATCGCGGCCAAC
GCGGTGGCGAACGGCTGGGCCGGCGTGCTGATCCATGGCGGCGTGCGCGATGTCGAGATGCTTGCCTCGCTGCCGTTGGG
GGTGCTGGCGCTGGCCGCCTGTCCGCGCCGCACCGAGCGACGCGATCTGGGCGATGTGGATGTGCCGGTGAGTTTTGCGG
GCGTGCCCTTCGTTCCAGGCCATTGGCTGTATGCCGATGCCAATGGCGTGCTGGTGTCGCCGCAGCCGTTGTCGTTGGAT
GGCGCCAGCGGATCGATCTGA

Upstream 100 bases:

>100_bases
CGCACCGCCGCTGCCTGGGTGCTTACGCGGCGCCTCACAGGTCGCCCGCACACCGCCGCGGCCGGCTACCATGCCAGCTC
TGCCGCGCGAGACTGCCCCG

Downstream 100 bases:

>100_bases
CCGAAAACCTGAGGGCGATGCAGTGACCTTGAAGCGATGGCTGAGTGGGGGCGTGCTGATGGTGGCAAGCTTGGTGGCGA
CAACGCACGCGGCCGAACTT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTWTTPDLCDRYPEVTIAEPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVLVVDGQGSLKHALLGDQIAAN
AVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTERRDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSLD
GASGSI

Sequences:

>Translated_166_residues
MTWTTPDLCDRYPEVTIAEPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVLVVDGQGSLKHALLGDQIAAN
AVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTERRDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSLD
GASGSI
>Mature_165_residues
TWTTPDLCDRYPEVTIAEPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVLVVDGQGSLKHALLGDQIAANA
VANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTERRDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSLDG
ASGSI

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=161, Percent_Identity=44.7204968944099, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAAH_XANOM (Q2P5H9)

Other databases:

- EMBL:   AP008229
- RefSeq:   YP_450472.1
- ProteinModelPortal:   Q2P5H9
- SMR:   Q2P5H9
- STRING:   Q2P5H9
- GeneID:   3857615
- GenomeReviews:   AP008229_GR
- KEGG:   xom:XOO_1443
- eggNOG:   COG0684
- HOGENOM:   HBG668175
- OMA:   NCALLGD
- PhylomeDB:   Q2P5H9
- ProtClustDB:   PRK09372
- BioCyc:   XORY342109:XOO1443-MONOMER
- InterPro:   IPR005493
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 17605; Mature: 17474

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWTTPDLCDRYPEVTIAEPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVL
CCCCCHHHHHCCCCCEECCCCHHHCCCCEEEECCEEEEEEECCCCHHHHHHCCCCCCEEE
VVDGQGSLKHALLGDQIAANAVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTER
EECCCCCEEHHHHCCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCC
RDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSLDGASGSI
CCCCCCCCCEEECCCCCCCCCEEEECCCCEEECCCCCEECCCCCCC
>Mature Secondary Structure 
TWTTPDLCDRYPEVTIAEPPFRHFGGRTVFCGPMVTVRCFEDNSRMRELAATPGDARVL
CCCCHHHHHCCCCCEECCCCHHHCCCCEEEECCEEEEEEECCCCHHHHHHCCCCCCEEE
VVDGQGSLKHALLGDQIAANAVANGWAGVLIHGGVRDVEMLASLPLGVLALAACPRRTER
EECCCCCEEHHHHCCHHHHHHHCCCCEEEEEECCCHHHHHHHHCCHHHHHHHHCCCCCCC
RDLGDVDVPVSFAGVPFVPGHWLYADANGVLVSPQPLSLDGASGSI
CCCCCCCCCEEECCCCCCCCCEEEECCCCEEECCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA