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The map label for this gene is hrpB [H]

Identifier: 84622923

GI number: 84622923

Start: 1386964

End: 1388394

Strand: Direct

Name: hrpB [H]

Synonym: XOO_1266

Alternate gene names: 84622923

Gene position: 1386964-1388394 (Clockwise)

Preceding gene: 84622921

Following gene: 84622924

Centisome position: 28.07

GC content: 64.36

Gene sequence:

>1431_bases
ATGATCCTTTCGACCTACTTTGCAGCGATCTCTGCGTTGTCTTACGCAGAACGTCTTCCTACCTATACGAGCAGGATGCT
GGTTGGTGCTTGGCCGCAGGGACTGCAACACCTTCAACAGCGACGCGACGGGCAGGGTGCAGCCGATGGCGCCGACGATG
AGGTCAGCCTGTTTGGTGCCAGCGGCGATGCGCTGCTGATCCTGGAATATCAAGAAGAGGCCGAAGACGCGTATCGGCAG
GCTTTGAAAGCCATGCGCGGGCAGCAGCGCCAATTGCGTTTGCTGTCGTGCCGGAATACCGCCTGGTTGATGCTGAGCCA
GCGACGCCTGAGTGCGGCATTGAACTGCTTTGCGCAGCTGGCGATGGATCGCGAAACGCCCCCCAGCCTGTGCGGCGAGA
GCCTGCTGGGCAAGGCACTGACCCACTTTCATCTGGGCCAGAGCACGCTGGCCTTGCAGACCCTGGAGCGCGCCAACGAG
GTGCTGGCCGAGCTGGAGAGTGGTGCTTCCGATTGGCTGCGTGTCGCCACCGCGCTGCGGCTGGACATGATCGCGCAGCT
GCGCATCCGCCGCTCCGATCGCATGGTCGACCATGTGTTCTGGCAGGCCACGCTGCGCCAGGAAGATGCCGCGCATGCCT
TCGAGCCCAGCGATTTACGCGCATGCATCGCCGATCTGGCCGAGAGCATGCCGGTGCTGGCGCAGCGCATGCGGCATGTG
CGCAACCTGCTGCGGATCGTCGGCGGCGATACCTTCGGCTTCGATGCGCAGATCGATGCGTTGCCGGCTGCGGCCACCGG
CTGCCCGCCGTGTGCGCGTCAGGACGCACAGGTGGAACTGGCGCTTGCCGCATTGGCGGTGGGGCGTGCCGATCTGGCCG
AGCGCGCGCTGGCCGGTGCCGGCCGGCATCATGCGCCGCGCTGGAATCTGGAGTTCGAATACTGCCAGGCCAAGATCAGT
CAGGCGCTGGGACGCACGGAACAAGCGTTGTTGCTCTACAACCGCTATGCGCTGGACGCGGTGCAATGCCTGCGTAGCGA
AGTGCAGGCACCGCGCTTGCTGGAAAGCGGTACCCCAGCGCACGTCTCCGACGATATTTCCGCCCGCTTGCCGGCCAAAT
ATCGGCGTGCGTATAGCTACATGATCACCAACGCGCACCGCTCGGATCTGTCGATCAATGAAGTGGCCGCACAGATTGGG
GTGACCGGGCGCGCACTGCAGCAGGCGTTCAAGTCGGCCACCGGGCTGTCGCCGACCCAGGTGCTGCGCCGTTACCGCAT
GCAGAGCATCCGCGACGAACTGCTGGCCGAAGGCGGCTGCGGCAGCGTGTTGCAAGCGGCCAGCCGCTGGGGTGTGGGCA
GCCGTTCGGCATTGGCCAAGGGCTATCGCCAGCACTTCAACGAAGCACCGATGGAAACCTTGCAACGGTAA

Upstream 100 bases:

>100_bases
TCAGTTGACAAATTCCATTGGATCCGCTGCATACAATCGTGTGCGCCGGCGAGCTCGGCGATTGTTGTCTTTTGCTCCGC
CCCCCAAGAGAGAGACCGGC

Downstream 100 bases:

>100_bases
TCTCTTGGCACGCCACGGCTTGGTAGCGCTACCTGCCGTGGCGGTTTGTTGTCGGCGGATGATGCAGCGGGCGTTAAGGT
GCGCAACGTAGGGCAGGGGC

Product: regulatory protein HrpX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAADGADDEVSLFGASGDALLILEYQEEAEDAYRQ
ALKAMRGQQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQLAMDRETPPSLCGESLLGKALTHFHLGQSTLALQTLERANE
VLAELESGASDWLRVATALRLDMIAQLRIRRSDRMVDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
RNLLRIVGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGAGRHHAPRWNLEFEYCQAKIS
QALGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPAHVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIG
VTGRALQQAFKSATGLSPTQVLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR

Sequences:

>Translated_476_residues
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAADGADDEVSLFGASGDALLILEYQEEAEDAYRQ
ALKAMRGQQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQLAMDRETPPSLCGESLLGKALTHFHLGQSTLALQTLERANE
VLAELESGASDWLRVATALRLDMIAQLRIRRSDRMVDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
RNLLRIVGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGAGRHHAPRWNLEFEYCQAKIS
QALGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPAHVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIG
VTGRALQQAFKSATGLSPTQVLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR
>Mature_476_residues
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAADGADDEVSLFGASGDALLILEYQEEAEDAYRQ
ALKAMRGQQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQLAMDRETPPSLCGESLLGKALTHFHLGQSTLALQTLERANE
VLAELESGASDWLRVATALRLDMIAQLRIRRSDRMVDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
RNLLRIVGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGAGRHHAPRWNLEFEYCQAKIS
QALGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPAHVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIG
VTGRALQQAFKSATGLSPTQVLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 52474; Mature: 52474

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAADGADDEVSLFGA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
SGDALLILEYQEEAEDAYRQALKAMRGQQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQL
CCCEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AMDRETPPSLCGESLLGKALTHFHLGQSTLALQTLERANEVLAELESGASDWLRVATALR
HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LDMIAQLRIRRSDRMVDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RNLLRIVGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GRHHAPRWNLEFEYCQAKISQALGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
HVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQ
CCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
VLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MILSTYFAAISALSYAERLPTYTSRMLVGAWPQGLQHLQQRRDGQGAADGADDEVSLFGA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
SGDALLILEYQEEAEDAYRQALKAMRGQQRQLRLLSCRNTAWLMLSQRRLSAALNCFAQL
CCCEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AMDRETPPSLCGESLLGKALTHFHLGQSTLALQTLERANEVLAELESGASDWLRVATALR
HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LDMIAQLRIRRSDRMVDHVFWQATLRQEDAAHAFEPSDLRACIADLAESMPVLAQRMRHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RNLLRIVGGDTFGFDAQIDALPAAATGCPPCARQDAQVELALAALAVGRADLAERALAGA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GRHHAPRWNLEFEYCQAKISQALGRTEQALLLYNRYALDAVQCLRSEVQAPRLLESGTPA
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
HVSDDISARLPAKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQ
CCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
VLRRYRMQSIRDELLAEGGCGSVLQAASRWGVGSRSALAKGYRQHFNEAPMETLQR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]