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The map label for this gene is rimM [H]

Identifier: 84622877

GI number: 84622877

Start: 1329350

End: 1329862

Strand: Direct

Name: rimM [H]

Synonym: XOO_1220

Alternate gene names: 84622877

Gene position: 1329350-1329862 (Clockwise)

Preceding gene: 84622876

Following gene: 84622878

Centisome position: 26.91

GC content: 60.04

Gene sequence:

>513_bases
ATGAAGCAGACCGAGCGCCGCATCCTGTTAGGCAGGGTTGTCGGCGCTTTTGGTGTCAAGGGCGAGCTGAAGCTCGAATC
CTGGACCGAGCCGCGTAGCGCGATCTTTCGGTATCAACCGTGGATCGTGCGTGCGCCATCGGGACAGGAATCGGTCATCA
ACGGCGTGCGTGGGCGCGATCAGGGCAAGAATCTGATTGCGGTGTTCCCCGGCGTCGCCGACCGCGACACCGTCGAGGCC
ATGCACGGGACTGAAATCTACGTCGCGCGCAGTGCCTTGCCGCCACCCAAGCCCGATGAGTATTACTGGGTGGATCTGGA
AGAGTTGCAGGTGGAAACCGTCGAGGGCGTCAAGCTCGGCACGGTGTCGCATCTGTTCTCCACTGGATCCAACGACGTGG
TGGTCGTACGTGGCGATCGCGAGCGGATGATTCCGTTTGTGTTTCCGGATTTCGTCAAATCCGTGGACTTCGAGGCCAAT
CTGATCGTGGTCGACTGGGATCCGGATTTCTGA

Upstream 100 bases:

>100_bases
ACCGACAAGGTGCGCAACCTGTATCGCGAAGCCAAGTCCCAGGCCGCCGCGGCCTGATCTTGAGCGCCAGGTGTCGCCAC
CTGACCCAGAGTCGACGCAG

Downstream 100 bases:

>100_bases
TCAAAGCGGTGCCTCGGCGCTGCTTTTGCTTTACCCATTTCCGATTCCCGATTCCCGATTCTCCAGTGCGCATCGACGTC
ATCAGCCTGTTCCCCGAGTT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRDQGKNLIAVFPGVADRDTVEA
MHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEAN
LIVVDWDPDF

Sequences:

>Translated_170_residues
MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRDQGKNLIAVFPGVADRDTVEA
MHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEAN
LIVVDWDPDF
>Mature_170_residues
MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRDQGKNLIAVFPGVADRDTVEA
MHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLGTVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEAN
LIVVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=37.6470588235294, Blast_Score=118, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19149; Mature: 19149

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRD
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHEEECCEEEECCCCCHHHHHCCCCCC
QGKNLIAVFPGVADRDTVEAMHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLG
CCCEEEEEECCCCCCCHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHHEEEEEECCEEEC
TVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEANLIVVDWDPDF
HHHHHHHCCCCCEEEEECCCCCCCCEECHHHHHCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MKQTERRILLGRVVGAFGVKGELKLESWTEPRSAIFRYQPWIVRAPSGQESVINGVRGRD
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHEEECCEEEECCCCCHHHHHCCCCCC
QGKNLIAVFPGVADRDTVEAMHGTEIYVARSALPPPKPDEYYWVDLEELQVETVEGVKLG
CCCEEEEEECCCCCCCHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHHEEEEEECCEEEC
TVSHLFSTGSNDVVVVRGDRERMIPFVFPDFVKSVDFEANLIVVDWDPDF
HHHHHHHCCCCCEEEEECCCCCCCCEECHHHHHCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA