| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is tktA [H]
Identifier: 84622727
GI number: 84622727
Start: 1167463
End: 1169463
Strand: Direct
Name: tktA [H]
Synonym: XOO_1070
Alternate gene names: 84622727
Gene position: 1167463-1169463 (Clockwise)
Preceding gene: 84622726
Following gene: 84622728
Centisome position: 23.63
GC content: 64.42
Gene sequence:
>2001_bases ATGACCCAGCCCACCCGTCGCCAGCTGGCCAACGCCATCCGTTTTCTTGCCGCAGATGCGGTCGAAGCCGCCAAGTCCGG TCATCCCGGCATGCCGATGGGCATGGCCGACATCGCCGAAGTGCTGTGGAACGATTTCTTCCGGCACAACCCCAACAATC CGCAGTGGTTCAACCGCGACCGTTTCGTGCTCTCCAACGGCCACGGTTCGATGCTGCAGTACGCGCTGTTGCACCTGTCC CGTTACCACCTGCCGATCGAGCAGCTCAAGCAATTCCGTCAGCTGCACAGCAAGACCCCCGGTCACCCCGAGCGCAGCGA AACCCCCGGAGTGGAGACCACCACCGGTCCGCTCGGGCAGGGGTTTGCAAACGCGGTGGGTTTTGCGCTGGCCGAGAAAT TGCTGGCGCAGCGCTACAACCGGCCTGAGCTGGAAATCGTCGATCACCGCACCTGGGTGTTCATGGGCGACGGCTGCCTG ATGGAAGGCATTTCGCACGAAGCCGCCTCGTTGGCCGGCACCTGGGGCCTGGGCAAGCTGGTGGCCTTCTGGGACAACAA CCAGATTTCCATCGACGGCAATACGGCCGGCTGGTTCAGCGACGACACCCCGGCGCGTTTCCAGGCCTATGGCTGGCATG TGATCCGTGACGTGGACGGGCACGACGCCGACAAGATCAAGGCCGCCATCGAGACCGCGCTGGAGAACACCGACAAGCCC ACGCTGATCTGCTGCCGCACCAAGATCGGCTTCGGTGCGCCGACCAAGGCCGGCAAGGAATCCTCGCACGGCGCGCCGCT GGGCAAGGACGAACTGGAAGGCGCGCGCAAGGCACTGGAATGGCCGTACGGCCCGTTCGAAATTCCCGAAGAGATCTACG CCGGCTGGCGTGCCGGCGGCACTGGCACTTTGCGTCAGGCCGAATGGGAGCAGCTGTTCGACAAGTACAGCAAGCAGTAC GCCAGTGAAGCCGATGAGCTGACCCGTCGCTCGCACGGCGAGTTGCCGGCCGACTTCATCGCCAAGGCCGATGCCTACAT CGCCAAGGCGCAGGAAGAGGGCCAGACCATCGCCTCGCGCAAGGCCTCGCAGCTGGCCATCGAAGCCTTCGCGCCGCTGC TGCCCGAGTTGATCGGCGGCTCGGCCGACCTGGCGCACTCCAATCTGACCCTGTGGAAGGCCAGCAAGTCGGTGGCGACG GACGACCCGGACGCCAACTACGTGTATTACGGTGTGCGCGAGTTCGGCATGACCGCCATTGCCAATGGCCTGGCGCTGCA TGGCGGTTTCATCCCGTTCGACGCCACCTTCCTGGTGTTCAGCGATTACGCCCGCAATGGCGTGCGTATGAGCGCACTGA ATCCGTCGCATGCCATCCATGTGTACACGCATGACTCGATCGGCCTGGGCGAAGACGGCCCGACCCATCAACCGGTGGAG CACCTGGCCTCGCTGCGCTACATCCCCAACAACGATGTGTGGCGCCCGGGCGATGCGGTGGAATCGGCAGTGAGCTGGAA GGCGGCCATTACCCGCAATGGCGGGCCGACCTGCCTGATCTTCAGCCGCCAGAACCTGCAGCACCAGCCGCGCAGCGCCG AACAGATCAAGTTGATCGAACGCGGTGGCTACGTGCTGGCCGATGCCGAAGGTGGCACGCCGGACGTGATCCTGATCGCC ACCGGCTCGGAGGTTGGTCTGGCAGTGGAAGCCAAGAAGACGCTGGATACGGCTGGCCTGAAGACACGCGTGGTGTCGAT GCCGTCGACCGATGTGTTCGATCGTCAGGACGCCGCGTACCGTGAGTCGGTGCTGCCGAACGCCGTGCGCAAGCGCGTGG CGGTGGAAGCGGGCGTGACCGGCTTCTGGCGCAAGTATGTGGGCCTGGATGGCGATGTGGTCGGCATCGACACCTTCGGC GCCTCGGCACCGGCGGATCAGCTGTATGCGTATTTCAAGATCACGGCCGAGCATGTGGTTGCGGCAGCCAAGGCGCTGTA A
Upstream 100 bases:
>100_bases ACTGCATCCGATTCTCCATTCCCGATTCCCCTAACGCACTGTGTGGGAGAATAAGGGCCTCCGCTTTCTGCGGTGTCCCC CTCCGCTTCCATAGACGCCC
Downstream 100 bases:
>100_bases CGCCTTGCGTGGTGCTTGAAAGAAAAAGCCGGCGAAAGCCGGCTTTTTTGTTGGATCTCGTGTGCGATGCGCGGTACGTC ATCGTTCAACGCACGCCTTG
Product: transketolase
Products: NA
Alternate protein names: TK 1 [H]
Number of amino acids: Translated: 666; Mature: 665
Protein sequence:
>666_residues MTQPTRRQLANAIRFLAADAVEAAKSGHPGMPMGMADIAEVLWNDFFRHNPNNPQWFNRDRFVLSNGHGSMLQYALLHLS RYHLPIEQLKQFRQLHSKTPGHPERSETPGVETTTGPLGQGFANAVGFALAEKLLAQRYNRPELEIVDHRTWVFMGDGCL MEGISHEAASLAGTWGLGKLVAFWDNNQISIDGNTAGWFSDDTPARFQAYGWHVIRDVDGHDADKIKAAIETALENTDKP TLICCRTKIGFGAPTKAGKESSHGAPLGKDELEGARKALEWPYGPFEIPEEIYAGWRAGGTGTLRQAEWEQLFDKYSKQY ASEADELTRRSHGELPADFIAKADAYIAKAQEEGQTIASRKASQLAIEAFAPLLPELIGGSADLAHSNLTLWKASKSVAT DDPDANYVYYGVREFGMTAIANGLALHGGFIPFDATFLVFSDYARNGVRMSALNPSHAIHVYTHDSIGLGEDGPTHQPVE HLASLRYIPNNDVWRPGDAVESAVSWKAAITRNGGPTCLIFSRQNLQHQPRSAEQIKLIERGGYVLADAEGGTPDVILIA TGSEVGLAVEAKKTLDTAGLKTRVVSMPSTDVFDRQDAAYRESVLPNAVRKRVAVEAGVTGFWRKYVGLDGDVVGIDTFG ASAPADQLYAYFKITAEHVVAAAKAL
Sequences:
>Translated_666_residues MTQPTRRQLANAIRFLAADAVEAAKSGHPGMPMGMADIAEVLWNDFFRHNPNNPQWFNRDRFVLSNGHGSMLQYALLHLS RYHLPIEQLKQFRQLHSKTPGHPERSETPGVETTTGPLGQGFANAVGFALAEKLLAQRYNRPELEIVDHRTWVFMGDGCL MEGISHEAASLAGTWGLGKLVAFWDNNQISIDGNTAGWFSDDTPARFQAYGWHVIRDVDGHDADKIKAAIETALENTDKP TLICCRTKIGFGAPTKAGKESSHGAPLGKDELEGARKALEWPYGPFEIPEEIYAGWRAGGTGTLRQAEWEQLFDKYSKQY ASEADELTRRSHGELPADFIAKADAYIAKAQEEGQTIASRKASQLAIEAFAPLLPELIGGSADLAHSNLTLWKASKSVAT DDPDANYVYYGVREFGMTAIANGLALHGGFIPFDATFLVFSDYARNGVRMSALNPSHAIHVYTHDSIGLGEDGPTHQPVE HLASLRYIPNNDVWRPGDAVESAVSWKAAITRNGGPTCLIFSRQNLQHQPRSAEQIKLIERGGYVLADAEGGTPDVILIA TGSEVGLAVEAKKTLDTAGLKTRVVSMPSTDVFDRQDAAYRESVLPNAVRKRVAVEAGVTGFWRKYVGLDGDVVGIDTFG ASAPADQLYAYFKITAEHVVAAAKAL >Mature_665_residues TQPTRRQLANAIRFLAADAVEAAKSGHPGMPMGMADIAEVLWNDFFRHNPNNPQWFNRDRFVLSNGHGSMLQYALLHLSR YHLPIEQLKQFRQLHSKTPGHPERSETPGVETTTGPLGQGFANAVGFALAEKLLAQRYNRPELEIVDHRTWVFMGDGCLM EGISHEAASLAGTWGLGKLVAFWDNNQISIDGNTAGWFSDDTPARFQAYGWHVIRDVDGHDADKIKAAIETALENTDKPT LICCRTKIGFGAPTKAGKESSHGAPLGKDELEGARKALEWPYGPFEIPEEIYAGWRAGGTGTLRQAEWEQLFDKYSKQYA SEADELTRRSHGELPADFIAKADAYIAKAQEEGQTIASRKASQLAIEAFAPLLPELIGGSADLAHSNLTLWKASKSVATD DPDANYVYYGVREFGMTAIANGLALHGGFIPFDATFLVFSDYARNGVRMSALNPSHAIHVYTHDSIGLGEDGPTHQPVEH LASLRYIPNNDVWRPGDAVESAVSWKAAITRNGGPTCLIFSRQNLQHQPRSAEQIKLIERGGYVLADAEGGTPDVILIAT GSEVGLAVEAKKTLDTAGLKTRVVSMPSTDVFDRQDAAYRESVLPNAVRKRVAVEAGVTGFWRKYVGLDGDVVGIDTFGA SAPADQLYAYFKITAEHVVAAAKAL
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=515, Percent_Identity=28.3495145631068, Blast_Score=163, Evalue=5e-40, Organism=Homo sapiens, GI4507521, Length=515, Percent_Identity=28.3495145631068, Blast_Score=163, Evalue=5e-40, Organism=Homo sapiens, GI133778974, Length=583, Percent_Identity=25.557461406518, Blast_Score=138, Evalue=1e-32, Organism=Escherichia coli, GI48994911, Length=662, Percent_Identity=64.9546827794562, Blast_Score=889, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=659, Percent_Identity=61.9119878603945, Blast_Score=845, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=674, Percent_Identity=25.9643916913947, Blast_Score=164, Evalue=1e-40, Organism=Saccharomyces cerevisiae, GI6325331, Length=676, Percent_Identity=46.7455621301775, Blast_Score=552, Evalue=1e-158, Organism=Saccharomyces cerevisiae, GI6319593, Length=668, Percent_Identity=43.4131736526946, Blast_Score=518, Evalue=1e-147, Organism=Drosophila melanogaster, GI45551847, Length=686, Percent_Identity=25.0728862973761, Blast_Score=155, Evalue=6e-38, Organism=Drosophila melanogaster, GI45550715, Length=686, Percent_Identity=25.0728862973761, Blast_Score=155, Evalue=6e-38, Organism=Drosophila melanogaster, GI24666278, Length=582, Percent_Identity=24.914089347079, Blast_Score=145, Evalue=1e-34, Organism=Drosophila melanogaster, GI24645119, Length=646, Percent_Identity=24.7678018575851, Blast_Score=133, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 72666; Mature: 72535
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00801 TRANSKETOLASE_1 ; PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPTRRQLANAIRFLAADAVEAAKSGHPGMPMGMADIAEVLWNDFFRHNPNNPQWFNRD CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC RFVLSNGHGSMLQYALLHLSRYHLPIEQLKQFRQLHSKTPGHPERSETPGVETTTGPLGQ EEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GFANAVGFALAEKLLAQRYNRPELEIVDHRTWVFMGDGCLMEGISHEAASLAGTWGLGKL HHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCCHHHHCCCHHHHHHHCCCCCCEE VAFWDNNQISIDGNTAGWFSDDTPARFQAYGWHVIRDVDGHDADKIKAAIETALENTDKP EEEECCCEEEECCCCCCCCCCCCCCCEEECCEEEEEECCCCCHHHHHHHHHHHHHCCCCC TLICCRTKIGFGAPTKAGKESSHGAPLGKDELEGARKALEWPYGPFEIPEEIYAGWRAGG EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC TGTLRQAEWEQLFDKYSKQYASEADELTRRSHGELPADFIAKADAYIAKAQEEGQTIASR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KASQLAIEAFAPLLPELIGGSADLAHSNLTLWKASKSVATDDPDANYVYYGVREFGMTAI HHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHH ANGLALHGGFIPFDATFLVFSDYARNGVRMSALNPSHAIHVYTHDSIGLGEDGPTHQPVE HCCCEECCCCCCCCCEEEEEEHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHH HLASLRYIPNNDVWRPGDAVESAVSWKAAITRNGGPTCLIFSRQNLQHQPRSAEQIKLIE HHHHEEECCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEECCCCCCCCCCHHHHHHEE RGGYVLADAEGGTPDVILIATGSEVGLAVEAKKTLDTAGLKTRVVSMPSTDVFDRQDAAY CCCEEEEECCCCCCCEEEEECCCCCCEEEEHHHHHHHCCCEEEEEECCCCCCCCCCHHHH RESVLPNAVRKRVAVEAGVTGFWRKYVGLDGDVVGIDTFGASAPADQLYAYFKITAEHVV HHHHCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHEEEHHHHHH AAAKAL HHHHCC >Mature Secondary Structure TQPTRRQLANAIRFLAADAVEAAKSGHPGMPMGMADIAEVLWNDFFRHNPNNPQWFNRD CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC RFVLSNGHGSMLQYALLHLSRYHLPIEQLKQFRQLHSKTPGHPERSETPGVETTTGPLGQ EEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC GFANAVGFALAEKLLAQRYNRPELEIVDHRTWVFMGDGCLMEGISHEAASLAGTWGLGKL HHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEEEECCCHHHHCCCHHHHHHHCCCCCCEE VAFWDNNQISIDGNTAGWFSDDTPARFQAYGWHVIRDVDGHDADKIKAAIETALENTDKP EEEECCCEEEECCCCCCCCCCCCCCCEEECCEEEEEECCCCCHHHHHHHHHHHHHCCCCC TLICCRTKIGFGAPTKAGKESSHGAPLGKDELEGARKALEWPYGPFEIPEEIYAGWRAGG EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC TGTLRQAEWEQLFDKYSKQYASEADELTRRSHGELPADFIAKADAYIAKAQEEGQTIASR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH KASQLAIEAFAPLLPELIGGSADLAHSNLTLWKASKSVATDDPDANYVYYGVREFGMTAI HHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHH ANGLALHGGFIPFDATFLVFSDYARNGVRMSALNPSHAIHVYTHDSIGLGEDGPTHQPVE HCCCEECCCCCCCCCEEEEEEHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHH HLASLRYIPNNDVWRPGDAVESAVSWKAAITRNGGPTCLIFSRQNLQHQPRSAEQIKLIE HHHHEEECCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEECCCCCCCCCCHHHHHHEE RGGYVLADAEGGTPDVILIATGSEVGLAVEAKKTLDTAGLKTRVVSMPSTDVFDRQDAAY CCCEEEEECCCCCCCEEEEECCCCCCEEEEHHHHHHHCCCEEEEEECCCCCCCCCCHHHH RESVLPNAVRKRVAVEAGVTGFWRKYVGLDGDVVGIDTFGASAPADQLYAYFKITAEHVV HHHHCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHEEEHHHHHH AAAKAL HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8241274; 9278503; 2153656 [H]