| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is 84621972
Identifier: 84621972
GI number: 84621972
Start: 344718
End: 346880
Strand: Direct
Name: 84621972
Synonym: XOO_0315
Alternate gene names: NA
Gene position: 344718-346880 (Clockwise)
Preceding gene: 84621971
Following gene: 84621976
Centisome position: 6.98
GC content: 63.62
Gene sequence:
>2163_bases ATGAAACCTGCTGCATCCGCCACTCCGCTCAATCGCACCGCGCCGGCATCGCCTGCGGGCATCCATGAGATCGAAGAAGA AGCATCCGCGCACGCATCGCCCAGCCATTCGCCTGCACAGTCCGAGGGCGCATTGACCATGCTCTCGCGCCGCCCGAGCA AGCGCGGAAAGGAGACCGCAGACGTCACGGCGTCTGCAGCGCAGTCGGCCAGCCACTTGCAATCGGTTGAACTGCAGGTT TCGCAGCCTGCAGTGTCGCCGAATACCGGCAACGCGTCGTTGGTGCGACTCAAAGAGCAACTGGCTGCCGACAACCTGCG CCCGGTCGAGCCGGAGCTGGCCGCCGAACTCATCAACAAGACGAGGCCCATGAAATTGGCGGACGCCACCGGCCCGCAGG AACGCGCAGCAACACATGCGGATCTGTTGGGCCGCATCCGCGAGACGGATGCGATGGCTTGGTACAGGGCGCAGGGATTG AGCGAAAACGAGGTTGCCAACTTGCGGCGTAGCGCATTGCTGTCGGGCATGCCCAACCCCACCGGCAGCTTCCTCAACAA TGCAATGCAGTACATCGTCTCGCCCTGGATCAACTACGCAACCCATCAGCCCTGGGCAGGCGCGGGATTCGGCTTTGCGA CAGCAGCGATCGCCGCGCCCATGAATGCGGCCCAGCAGTCGGCGGTGGTCAGCTTGTGCGAATCCATCCGCGAGCACGGC GGGCACGTCATCGTGCCGGACAAGAAGCAGATCAACGACAAGCATTGGCTACCGGCGCTTGCCAAGGCGCTGGAAAGCCA TATCGCAGAATTCAGCGGGTGCTGCGACAGGTTCCGCGCACTCAAGGACGCCGCAGACCAGAACCCCGCGGCGCAGCCAA CAGCCGACTTCATTGCCGCGGCTCATCAAGTGCTGCAAGCCGAAACGCGCCTGCATCAGGCCCAGCACGACTTTGTCATG ACCCAGGGCGCGCACGAACGGCAATGGATGGGCAATCGCTGGCAAGCGGTCCCGCGTATTCTGCGTTCGCCGTTGTCCGG AACGCTGGGCCTGCTCAGCAAGACCGGCGCAATGCGGGCGTTGTCGCCGACCGCGCAGACCGTCGGCGCCCTGCTGATGA GTGCTGTGCAGCACGTGGCTGCCGGCTTCGACGAACAGGCAAAACAGGATTACAACAACAAGCTCAATCTGCTGTACGCC GATGTGTTGACCGACACGGGCAAGGCGAAACTTGCACGTGGTGAGCCAGTGGCGGCAGAGGAGATCGATCAGGGCAAATT GCGCAAACTGATTCAATCGCCGACGCAGGCGCTGGTGAAACGCATCACCAGCGGACTGGTAGCGATGGAGAAGGAACTCA AGGCCCAAGTCGCCGCGCCGCGCTCCCCGCAGGCGACGACAGGCGACGACGACCTGGATCTGGAAGCGGGCCACGGCGCC GGCCCGGCAAAGGCGCTGAAATTGCTGAGCCAGGATCTGAAAGCCTTGCGCGAGGGCAGGCTGGACGAACTCGATCCGGA CGGCGTCGCAGCAACGCTGCTGCTCGGCGCCGAGAAGTCTGTGGTCTCGGACCAACTGATCGGCGATATCATCAAGAAGT ACACTTCGCGCGAGTTCTCGGCACAGACCGCCCAACGCATTGGCCAGATGTTTCATCTAGGCGTACTGGGCAGCGCGGCG TCCTCGGTGATCGGCAAGGCCAGCTCCGCGGCGCGGGGCGGAACGCGCAACGTGCCGATCCCACAGGCATTGGCAATTTC CGCCCTGTCAGGAGGCATGGCTGCGGTCGGCGCGCTGAATCAGCACACCGCCATCACCGTCAAGAACAACCGCCGCGAGG GCGATACAGACATCGGATTGAAGCAGCAAGTATTACGCGGTGTCATGGGGGGCGCCAACGAAGCGCTGTCCCAACGGCGG GCAACCAAGGCGAGTCAAGCGATCAATGCGCTGGTGCAACGCAGCGATGTTGAAGCGCTGTTGAGTCGAGCCAAAGCGCT CACCCAGCGATCCGGGGCCACGTCATCCGCGACGCATGCCTCACCCGCACTGACCCTGCCAGAAGCGGTGGAGCAGCTGC GTCCAGGTGTGGCGTCCGCATCGCAGTCGCACGAGGTCATCGTGCAGATCGGGGAGGAGGATCGGGCACTGCCGCCGGCG TAA
Upstream 100 bases:
>100_bases CACGGACAATACGCCCAGTTCCAGGCTGGTTGACGATTGCATTACCCGGCAGCGGCCATTGACCGATGCCGCCACTGCAT CAAGCACCAGGAGAAATGTG
Downstream 100 bases:
>100_bases TGCGGCACCCGCTGCTCCGACGCATCTATTGCGATGCATCAAAAACGACGCGAGCAAACGGGATGGTGCAAAGCCATCCC GTCTGGATCATCGCCGGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 720; Mature: 720
Protein sequence:
>720_residues MKPAASATPLNRTAPASPAGIHEIEEEASAHASPSHSPAQSEGALTMLSRRPSKRGKETADVTASAAQSASHLQSVELQV SQPAVSPNTGNASLVRLKEQLAADNLRPVEPELAAELINKTRPMKLADATGPQERAATHADLLGRIRETDAMAWYRAQGL SENEVANLRRSALLSGMPNPTGSFLNNAMQYIVSPWINYATHQPWAGAGFGFATAAIAAPMNAAQQSAVVSLCESIREHG GHVIVPDKKQINDKHWLPALAKALESHIAEFSGCCDRFRALKDAADQNPAAQPTADFIAAAHQVLQAETRLHQAQHDFVM TQGAHERQWMGNRWQAVPRILRSPLSGTLGLLSKTGAMRALSPTAQTVGALLMSAVQHVAAGFDEQAKQDYNNKLNLLYA DVLTDTGKAKLARGEPVAAEEIDQGKLRKLIQSPTQALVKRITSGLVAMEKELKAQVAAPRSPQATTGDDDLDLEAGHGA GPAKALKLLSQDLKALREGRLDELDPDGVAATLLLGAEKSVVSDQLIGDIIKKYTSREFSAQTAQRIGQMFHLGVLGSAA SSVIGKASSAARGGTRNVPIPQALAISALSGGMAAVGALNQHTAITVKNNRREGDTDIGLKQQVLRGVMGGANEALSQRR ATKASQAINALVQRSDVEALLSRAKALTQRSGATSSATHASPALTLPEAVEQLRPGVASASQSHEVIVQIGEEDRALPPA
Sequences:
>Translated_720_residues MKPAASATPLNRTAPASPAGIHEIEEEASAHASPSHSPAQSEGALTMLSRRPSKRGKETADVTASAAQSASHLQSVELQV SQPAVSPNTGNASLVRLKEQLAADNLRPVEPELAAELINKTRPMKLADATGPQERAATHADLLGRIRETDAMAWYRAQGL SENEVANLRRSALLSGMPNPTGSFLNNAMQYIVSPWINYATHQPWAGAGFGFATAAIAAPMNAAQQSAVVSLCESIREHG GHVIVPDKKQINDKHWLPALAKALESHIAEFSGCCDRFRALKDAADQNPAAQPTADFIAAAHQVLQAETRLHQAQHDFVM TQGAHERQWMGNRWQAVPRILRSPLSGTLGLLSKTGAMRALSPTAQTVGALLMSAVQHVAAGFDEQAKQDYNNKLNLLYA DVLTDTGKAKLARGEPVAAEEIDQGKLRKLIQSPTQALVKRITSGLVAMEKELKAQVAAPRSPQATTGDDDLDLEAGHGA GPAKALKLLSQDLKALREGRLDELDPDGVAATLLLGAEKSVVSDQLIGDIIKKYTSREFSAQTAQRIGQMFHLGVLGSAA SSVIGKASSAARGGTRNVPIPQALAISALSGGMAAVGALNQHTAITVKNNRREGDTDIGLKQQVLRGVMGGANEALSQRR ATKASQAINALVQRSDVEALLSRAKALTQRSGATSSATHASPALTLPEAVEQLRPGVASASQSHEVIVQIGEEDRALPPA >Mature_720_residues MKPAASATPLNRTAPASPAGIHEIEEEASAHASPSHSPAQSEGALTMLSRRPSKRGKETADVTASAAQSASHLQSVELQV SQPAVSPNTGNASLVRLKEQLAADNLRPVEPELAAELINKTRPMKLADATGPQERAATHADLLGRIRETDAMAWYRAQGL SENEVANLRRSALLSGMPNPTGSFLNNAMQYIVSPWINYATHQPWAGAGFGFATAAIAAPMNAAQQSAVVSLCESIREHG GHVIVPDKKQINDKHWLPALAKALESHIAEFSGCCDRFRALKDAADQNPAAQPTADFIAAAHQVLQAETRLHQAQHDFVM TQGAHERQWMGNRWQAVPRILRSPLSGTLGLLSKTGAMRALSPTAQTVGALLMSAVQHVAAGFDEQAKQDYNNKLNLLYA DVLTDTGKAKLARGEPVAAEEIDQGKLRKLIQSPTQALVKRITSGLVAMEKELKAQVAAPRSPQATTGDDDLDLEAGHGA GPAKALKLLSQDLKALREGRLDELDPDGVAATLLLGAEKSVVSDQLIGDIIKKYTSREFSAQTAQRIGQMFHLGVLGSAA SSVIGKASSAARGGTRNVPIPQALAISALSGGMAAVGALNQHTAITVKNNRREGDTDIGLKQQVLRGVMGGANEALSQRR ATKASQAINALVQRSDVEALLSRAKALTQRSGATSSATHASPALTLPEAVEQLRPGVASASQSHEVIVQIGEEDRALPPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75992; Mature: 75992
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAASATPLNRTAPASPAGIHEIEEEASAHASPSHSPAQSEGALTMLSRRPSKRGKETA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCHH DVTASAAQSASHLQSVELQVSQPAVSPNTGNASLVRLKEQLAADNLRPVEPELAAELINK HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHC TRPMKLADATGPQERAATHADLLGRIRETDAMAWYRAQGLSENEVANLRRSALLSGMPNP CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC TGSFLNNAMQYIVSPWINYATHQPWAGAGFGFATAAIAAPMNAAQQSAVVSLCESIREHG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GHVIVPDKKQINDKHWLPALAKALESHIAEFSGCCDRFRALKDAADQNPAAQPTADFIAA CEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH AHQVLQAETRLHQAQHDFVMTQGAHERQWMGNRWQAVPRILRSPLSGTLGLLSKTGAMRA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCHHH LSPTAQTVGALLMSAVQHVAAGFDEQAKQDYNNKLNLLYADVLTDTGKAKLARGEPVAAE CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHEEEHHHHHCCCCHHCCCCCCCCHH EIDQGKLRKLIQSPTQALVKRITSGLVAMEKELKAQVAAPRSPQATTGDDDLDLEAGHGA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC GPAKALKLLSQDLKALREGRLDELDPDGVAATLLLGAEKSVVSDQLIGDIIKKYTSREFS CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHH AQTAQRIGQMFHLGVLGSAASSVIGKASSAARGGTRNVPIPQALAISALSGGMAAVGALN HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHCCC QHTAITVKNNRREGDTDIGLKQQVLRGVMGGANEALSQRRATKASQAINALVQRSDVEAL CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSRAKALTQRSGATSSATHASPALTLPEAVEQLRPGVASASQSHEVIVQIGEEDRALPPA HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCC >Mature Secondary Structure MKPAASATPLNRTAPASPAGIHEIEEEASAHASPSHSPAQSEGALTMLSRRPSKRGKETA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCHH DVTASAAQSASHLQSVELQVSQPAVSPNTGNASLVRLKEQLAADNLRPVEPELAAELINK HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHC TRPMKLADATGPQERAATHADLLGRIRETDAMAWYRAQGLSENEVANLRRSALLSGMPNP CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC TGSFLNNAMQYIVSPWINYATHQPWAGAGFGFATAAIAAPMNAAQQSAVVSLCESIREHG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GHVIVPDKKQINDKHWLPALAKALESHIAEFSGCCDRFRALKDAADQNPAAQPTADFIAA CEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH AHQVLQAETRLHQAQHDFVMTQGAHERQWMGNRWQAVPRILRSPLSGTLGLLSKTGAMRA HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCHHH LSPTAQTVGALLMSAVQHVAAGFDEQAKQDYNNKLNLLYADVLTDTGKAKLARGEPVAAE CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHEEEHHHHHCCCCHHCCCCCCCCHH EIDQGKLRKLIQSPTQALVKRITSGLVAMEKELKAQVAAPRSPQATTGDDDLDLEAGHGA HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC GPAKALKLLSQDLKALREGRLDELDPDGVAATLLLGAEKSVVSDQLIGDIIKKYTSREFS CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHH AQTAQRIGQMFHLGVLGSAASSVIGKASSAARGGTRNVPIPQALAISALSGGMAAVGALN HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHCCC QHTAITVKNNRREGDTDIGLKQQVLRGVMGGANEALSQRRATKASQAINALVQRSDVEAL CCEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSRAKALTQRSGATSSATHASPALTLPEAVEQLRPGVASASQSHEVIVQIGEEDRALPPA HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA