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The map label for this gene is ndvB [H]

Identifier: 84621963

GI number: 84621963

Start: 327599

End: 329998

Strand: Direct

Name: ndvB [H]

Synonym: XOO_0306

Alternate gene names: 84621963

Gene position: 327599-329998 (Clockwise)

Preceding gene: 84621962

Following gene: 84621965

Centisome position: 6.63

GC content: 64.71

Gene sequence:

>2400_bases
GTGTCTGCAACGCCTCTTGCTGGTTCCGACGATCTGTCCACCTTGCTGGCACCCAGTGCCGACGGTGCGCGCTACGCGCT
CTATAGCCCCACCGCCATGCCCAATGCCGGCGGCTTTTTGTGGAACCGCCGCATGATGCTGCAGCTGACCTGCCGCGGTT
ATGCCACCGGCCAGTTCATGCAGCCGGAGCCATCGAAATACGCGCACGCGCCGATGCTAGAAGCACGCAATTTCATGATG
CCGGAGCAGCCGTACTATGCGCATCATCCCGGGCGCTTTTTCTATCTCAAGGACGAAGACACCGGCGCGTTGTATTCGGT
GCCGCATGAACCGGTGCGCGCGCAGCCGCAAGCGTTTGAATTCTCTGCGGGCAAGCACGATGTGCGCTGGCGCGTGCGTC
ACGACGACATCGTGGTGGAGTTGTGCGTGTCTCTGCCCACCGACGATGCGGTGGAGCTGTGGGAATGCCGTGTGCACAAC
GTGTCCGCGCGCGCGCGCAGGCTGAGCCTGTATGCCTATTTTCCGGTCGGCTACATGTCGTGGATGCATCAATCCGGCGG
TTACGATCCGGCCTTGGGCGGGATCGTCTGCCGCAGCGTGGCGCCGTATCAAAAGGTGGACGATTACTTCCGCCAGCGCG
ATTTCAAGGACTGCACCTTCCTGCTGCACGAGCAGACGCCGGTGGCCTGGGACGCGCAGCAGATTGCGTTCGAAGGCGAG
GGTGGTTTGCACGCGCCATCGGCTGTGCAGGCCGAGCAGCTGGGCAACCATGCTGCGCATTACGAAACGCCAGCCGCCGC
ATTGCAATACCGGCTGACACTGGACGCCGATGCCGTCAGCGTCCACCGCTTCGCATTCGGGCCGGCCAAGGACGACGCCG
ACATCGCCGCGCTACGTGCGCGCTACCTCTCCGAAGCCGGCTTTGCCCAAGCCGCGCGTGAGTATGCGCACTATCTGCAG
GCCGGCCAGGGCTGCGTGCAGATCGCAACACCCGATGCGGCACTGGACAATCTGGTCAACCACTGGTTGCCGCGTCAGGT
GTTCTATCACGGCGACGTCAATCGCCTGACCACCGATCCGCAGACGCGCAACTATCTGCAGGACCATATGGGCATGGCCT
ATCTGCAGCCAGCCACCGCACGCGCGGCGTTGCTGCATGCCTTGTCGCAGCAGGAACCCAGCGGCGCAATGCCGGACGGC
ATTCTGTTGGTGGAAGGCGCCGAGCTGAAATACATCAACCAGGTGCCGCATACCGACCACTGCGTGTGGCTGCCGATCTT
CCTGAGCGCGTATCTGGCCGAAACCGGCGATGCCAGCATCCTGGACGCGATCGTGGAAACCCACGACGGGCAGCGCCTGA
GTGTGGCCGATCGGTTGGATGCGGCGATGCAGTGGCTGCTGGATGCGCGCGATGCGCGTGGTCTGAGTTTTATCGCGCAG
GGCGATTGGTGCGACCCCATGAACATGGTCGGCTGGCGCGGCAAGGGGGTGTCCGGCTGGCTCACCGTCGCCACCGCGTA
TGCATTGCGCTTGTGGTCGGAGATCTGCAGCGCGCAGGGCCGCAGCGCGCAGGGGCAGACATTCGGTGAGGCAGTTGCCG
CCATCAACGCCGATGCCAATCGTGAGTTGTGGGATGGCAACTGGTACGCACGTGGCATCACCGACGACGGCGTGCGTTTC
GGCATCGCGGAGGATGTGGAGGGGCGCATCTATCTCAATCCGCAGAGTTTCGCGCTGCTGGCCGGTACTGCCGATGCGGA
GCAACGTGCGGCGCTGCTAGAGGCGGTGCGCGAGCAGCTGCACACGCCGTATGGCCCGGTGATGCTGGCGCCGGCGTACA
CGCATATGCGCGACGACGTCGGCCGGCTGACGCAGAAGTGGCCGGGCGCAGCGGAAAACGGTGCGGTGTACAACCACGCG
GCGGCATTCTATTTGTACAGCCTGTACCAGATCGGCGAAGCCGACCGCGCCTGGGAGATCCTGCGCGCCCTGCTGCCAGG
GCCGACACGCGAGGATGTACTGCAACGCGGGCACCTGCCGGTGTCGTTGCCCAACTACTACCGCGGCGCATGGCATCAGT
ACCCGCGCACGGCCGGGCGTTCGAGTCAGTTGTTCAACACCGGCACGGTGGCGTGGGTGTATCGCTGCGTGCTGGAAGGG
TTATTTGGCCTGGTCGGCGAGGGCGATGCGCTGGCGATTCGTCCGCAGCTGCCATCGCACTGGCCGCACGCGCGTGCGAC
ACGTCAGTTCCGTGGTGCGGACTTCGAGGTCACGCTGATGCGCGAGGCGGGCCGCACTGCGATGCAGGTGCTGGTGGATG
GCGAGGTCTGTCCGGATCGGCGCATCGGCAACATCGTGGGTGGGCAGGTGTATCGGGTCGAGGTACGGCTGCCGGGATGA

Upstream 100 bases:

>100_bases
CCTGGACCATGCGTTTTTATCCGCTGGACGACGGGCTGTTGAACCGCATCCAGCATGAACTGGCCGCGCGCAAGCGCGAC
GAACAGGAGCACCTGTGACC

Downstream 100 bases:

>100_bases
GGCTGGGGTCGGCCGGCGTTGCGGCAAGGTCCGTCCCGACGTAACCAATGGTTGCCAAGAAGCAGCTGGAGAGCGTCCTG
GATGCTCTCCAGCCCGCCTT

Product: NdvB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 799; Mature: 798

Protein sequence:

>799_residues
MSATPLAGSDDLSTLLAPSADGARYALYSPTAMPNAGGFLWNRRMMLQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMM
PEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHN
VSARARRLSLYAYFPVGYMSWMHQSGGYDPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQIAFEGE
GGLHAPSAVQAEQLGNHAAHYETPAAALQYRLTLDADAVSVHRFAFGPAKDDADIAALRARYLSEAGFAQAAREYAHYLQ
AGQGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDG
ILLVEGAELKYINQVPHTDHCVWLPIFLSAYLAETGDASILDAIVETHDGQRLSVADRLDAAMQWLLDARDARGLSFIAQ
GDWCDPMNMVGWRGKGVSGWLTVATAYALRLWSEICSAQGRSAQGQTFGEAVAAINADANRELWDGNWYARGITDDGVRF
GIAEDVEGRIYLNPQSFALLAGTADAEQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHA
AAFYLYSLYQIGEADRAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEG
LFGLVGEGDALAIRPQLPSHWPHARATRQFRGADFEVTLMREAGRTAMQVLVDGEVCPDRRIGNIVGGQVYRVEVRLPG

Sequences:

>Translated_799_residues
MSATPLAGSDDLSTLLAPSADGARYALYSPTAMPNAGGFLWNRRMMLQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMM
PEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHN
VSARARRLSLYAYFPVGYMSWMHQSGGYDPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQIAFEGE
GGLHAPSAVQAEQLGNHAAHYETPAAALQYRLTLDADAVSVHRFAFGPAKDDADIAALRARYLSEAGFAQAAREYAHYLQ
AGQGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDG
ILLVEGAELKYINQVPHTDHCVWLPIFLSAYLAETGDASILDAIVETHDGQRLSVADRLDAAMQWLLDARDARGLSFIAQ
GDWCDPMNMVGWRGKGVSGWLTVATAYALRLWSEICSAQGRSAQGQTFGEAVAAINADANRELWDGNWYARGITDDGVRF
GIAEDVEGRIYLNPQSFALLAGTADAEQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHA
AAFYLYSLYQIGEADRAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEG
LFGLVGEGDALAIRPQLPSHWPHARATRQFRGADFEVTLMREAGRTAMQVLVDGEVCPDRRIGNIVGGQVYRVEVRLPG
>Mature_798_residues
SATPLAGSDDLSTLLAPSADGARYALYSPTAMPNAGGFLWNRRMMLQLTCRGYATGQFMQPEPSKYAHAPMLEARNFMMP
EQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFEFSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNV
SARARRLSLYAYFPVGYMSWMHQSGGYDPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQIAFEGEG
GLHAPSAVQAEQLGNHAAHYETPAAALQYRLTLDADAVSVHRFAFGPAKDDADIAALRARYLSEAGFAQAAREYAHYLQA
GQGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDPQTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGI
LLVEGAELKYINQVPHTDHCVWLPIFLSAYLAETGDASILDAIVETHDGQRLSVADRLDAAMQWLLDARDARGLSFIAQG
DWCDPMNMVGWRGKGVSGWLTVATAYALRLWSEICSAQGRSAQGQTFGEAVAAINADANRELWDGNWYARGITDDGVRFG
IAEDVEGRIYLNPQSFALLAGTADAEQRAALLEAVREQLHTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAA
AFYLYSLYQIGEADRAWEILRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEGL
FGLVGEGDALAIRPQLPSHWPHARATRQFRGADFEVTLMREAGRTAMQVLVDGEVCPDRRIGNIVGGQVYRVEVRLPG

Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]

COG id: COG3459

COG function: function code G; Cellobiose phosphorylase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens ChvB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR009342
- InterPro:   IPR019282
- InterPro:   IPR021478
- InterPro:   IPR011013
- InterPro:   IPR010383
- InterPro:   IPR010403 [H]

Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]

EC number: NA

Molecular weight: Translated: 88659; Mature: 88528

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPLAGSDDLSTLLAPSADGARYALYSPTAMPNAGGFLWNRRMMLQLTCRGYATGQFM
CCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCEEEEEEEECCCCCCCCC
QPEPSKYAHAPMLEARNFMMPEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFE
CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEE
FSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNVSARARRLSLYAYFPVGYMS
ECCCCCCEEEEEECCCEEEHHHHCCCCCCHHHHHHHHHCCHHHHEEEEEEEEECCHHHHH
WMHQSGGYDPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQIAFEGE
HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHEEEECC
GGLHAPSAVQAEQLGNHAAHYETPAAALQYRLTLDADAVSVHRFAFGPAKDDADIAALRA
CCCCCCCCHHHHHHCCCCHHCCCCHHHEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHH
RYLSEAGFAQAAREYAHYLQAGQGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDP
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCC
QTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVPHTDH
HHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCC
CVWLPIFLSAYLAETGDASILDAIVETHDGQRLSVADRLDAAMQWLLDARDARGLSFIAQ
EEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEC
GDWCDPMNMVGWRGKGVSGWLTVATAYALRLWSEICSAQGRSAQGQTFGEAVAAINADAN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC
RELWDGNWYARGITDDGVRFGIAEDVEGRIYLNPQSFALLAGTADAEQRAALLEAVREQL
CCEECCCEEEECCCCCCEEECCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
HTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADRAWEI
CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
LRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEG
HHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LFGLVGEGDALAIRPQLPSHWPHARATRQFRGADFEVTLMREAGRTAMQVLVDGEVCPDR
HHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEHHCCCCEEEEEECCCCCCCC
RIGNIVGGQVYRVEVRLPG
CCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
SATPLAGSDDLSTLLAPSADGARYALYSPTAMPNAGGFLWNRRMMLQLTCRGYATGQFM
CCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCEECCEEEEEEEECCCCCCCCC
QPEPSKYAHAPMLEARNFMMPEQPYYAHHPGRFFYLKDEDTGALYSVPHEPVRAQPQAFE
CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCEE
FSAGKHDVRWRVRHDDIVVELCVSLPTDDAVELWECRVHNVSARARRLSLYAYFPVGYMS
ECCCCCCEEEEEECCCEEEHHHHCCCCCCHHHHHHHHHCCHHHHEEEEEEEEECCHHHHH
WMHQSGGYDPALGGIVCRSVAPYQKVDDYFRQRDFKDCTFLLHEQTPVAWDAQQIAFEGE
HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHEEEECC
GGLHAPSAVQAEQLGNHAAHYETPAAALQYRLTLDADAVSVHRFAFGPAKDDADIAALRA
CCCCCCCCHHHHHHCCCCHHCCCCHHHEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHH
RYLSEAGFAQAAREYAHYLQAGQGCVQIATPDAALDNLVNHWLPRQVFYHGDVNRLTTDP
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCC
QTRNYLQDHMGMAYLQPATARAALLHALSQQEPSGAMPDGILLVEGAELKYINQVPHTDH
HHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCC
CVWLPIFLSAYLAETGDASILDAIVETHDGQRLSVADRLDAAMQWLLDARDARGLSFIAQ
EEHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEEC
GDWCDPMNMVGWRGKGVSGWLTVATAYALRLWSEICSAQGRSAQGQTFGEAVAAINADAN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC
RELWDGNWYARGITDDGVRFGIAEDVEGRIYLNPQSFALLAGTADAEQRAALLEAVREQL
CCEECCCEEEECCCCCCEEECCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
HTPYGPVMLAPAYTHMRDDVGRLTQKWPGAAENGAVYNHAAAFYLYSLYQIGEADRAWEI
CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
LRALLPGPTREDVLQRGHLPVSLPNYYRGAWHQYPRTAGRSSQLFNTGTVAWVYRCVLEG
HHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
LFGLVGEGDALAIRPQLPSHWPHARATRQFRGADFEVTLMREAGRTAMQVLVDGEVCPDR
HHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEHHCCCCEEEEEECCCCCCCC
RIGNIVGGQVYRVEVRLPG
CCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2154461; 11481430 [H]