| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is hel [H]
Identifier: 84621882
GI number: 84621882
Start: 245908
End: 246738
Strand: Direct
Name: hel [H]
Synonym: XOO_0225
Alternate gene names: 84621882
Gene position: 245908-246738 (Clockwise)
Preceding gene: 84621880
Following gene: 84621883
Centisome position: 4.98
GC content: 66.43
Gene sequence:
>831_bases ATGCCGACGCCAGCGCTGCGGTCAGCCAAGGCTGCGACGTCGTCCACCACCGCACCGGCTGGCGACGACAATCTCAACGC GGTGCTGTGGATGCAGCGCTCGGAGGAATATCGTGCCGTGGCCGAGCAGACCTACCGCGCCGCTGCCGACAAGCTCGATA GCGCGCTCAATCAACCCAACTGGGATGCGTTGGTGCCGGAAGAACGCGGCAACGCCGCCACCGGGCTGAAGCCGGCCGTG GTGCTGGACGTGGACGAGACCGTGCTGGACAACTCGCCCTACCTAGCCCGCCTGCTGCGCGATGGCAAGGAATACGACGC GCTGAGTTGGGACCAGTGGGTGGCTGAGAAGAAAGCCACTGCCATTCCCGGCGTGGTGGACTTCGCCAAGGCTGCCAATG CGCGTGGCATCACCCTGATCTACATCTCCAACCGTGCCGTGCACCTCAAGGACGCCACGCTGGCCAATCTGCGCAGCGTG GGTCTGCCGGTGGCCGACGACAGCGTGTTTCTCGGCCTGGGCACGGTGGCGCAGGGCTGCGAGCAGAACGGCAGCGAAAA GAACTGCCGCCGCCAGCTGGCCGGGCAGAAGTACCGCGTGCTGATGCAGTTCGGCGACCAGCTGGGTGACTTCGTGCAGG TCAGCGCCAACACCCGCCAGGCCCGTGGCGCGCTGCTCCAGCAATATCACGACTGGTTCGGCGAACGGTGGTGGATGCTG CCCAACCCCAGCTACGGCGGCTGGGAGCCGGCGCAGTTCAACAACGACTATGCGCAACCCTGGCAAACGCGCCACGATGC CAAGCGCGCGGCGCTGGAGGTGGCCCGATGA
Upstream 100 bases:
>100_bases CCGTTGTCCCTGCTCGCCTGCACTGCGCTGGCCTTGAGCGCCTGCAAGCCCACGGACACACAACCGGCCCCGCACGTGCA GGAAGCCACCGCAACTGCCA
Downstream 100 bases:
>100_bases GCCGGGCGCCGCTGCCGCTGGCCGCCCATGAGCGGCTGATCTTCGCGCTGGATGTGCCCAGCCACGATGAGGCGATCGCC TGGGTGGACCGGCTTGGCGA
Product: putative acid phosphatase
Products: NA
Alternate protein names: Outer membrane protein P4; OMP P4 [H]
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MPTPALRSAKAATSSTTAPAGDDNLNAVLWMQRSEEYRAVAEQTYRAAADKLDSALNQPNWDALVPEERGNAATGLKPAV VLDVDETVLDNSPYLARLLRDGKEYDALSWDQWVAEKKATAIPGVVDFAKAANARGITLIYISNRAVHLKDATLANLRSV GLPVADDSVFLGLGTVAQGCEQNGSEKNCRRQLAGQKYRVLMQFGDQLGDFVQVSANTRQARGALLQQYHDWFGERWWML PNPSYGGWEPAQFNNDYAQPWQTRHDAKRAALEVAR
Sequences:
>Translated_276_residues MPTPALRSAKAATSSTTAPAGDDNLNAVLWMQRSEEYRAVAEQTYRAAADKLDSALNQPNWDALVPEERGNAATGLKPAV VLDVDETVLDNSPYLARLLRDGKEYDALSWDQWVAEKKATAIPGVVDFAKAANARGITLIYISNRAVHLKDATLANLRSV GLPVADDSVFLGLGTVAQGCEQNGSEKNCRRQLAGQKYRVLMQFGDQLGDFVQVSANTRQARGALLQQYHDWFGERWWML PNPSYGGWEPAQFNNDYAQPWQTRHDAKRAALEVAR >Mature_275_residues PTPALRSAKAATSSTTAPAGDDNLNAVLWMQRSEEYRAVAEQTYRAAADKLDSALNQPNWDALVPEERGNAATGLKPAVV LDVDETVLDNSPYLARLLRDGKEYDALSWDQWVAEKKATAIPGVVDFAKAANARGITLIYISNRAVHLKDATLANLRSVG LPVADDSVFLGLGTVAQGCEQNGSEKNCRRQLAGQKYRVLMQFGDQLGDFVQVSANTRQARGALLQQYHDWFGERWWMLP NPSYGGWEPAQFNNDYAQPWQTRHDAKRAALEVAR
Specific function: Unknown
COG id: COG2503
COG function: function code R; Predicted secreted acid phosphatase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005519 - InterPro: IPR023214 - InterPro: IPR006423 [H]
Pfam domain/function: PF03767 Acid_phosphat_B [H]
EC number: NA
Molecular weight: Translated: 30477; Mature: 30346
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTPALRSAKAATSSTTAPAGDDNLNAVLWMQRSEEYRAVAEQTYRAAADKLDSALNQPN CCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC WDALVPEERGNAATGLKPAVVLDVDETVLDNSPYLARLLRDGKEYDALSWDQWVAEKKAT CCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCC AIPGVVDFAKAANARGITLIYISNRAVHLKDATLANLRSVGLPVADDSVFLGLGTVAQGC CCCHHHHHHHHCCCCCEEEEEECCCEEEECCHHHHHHHHCCCCCCCCCEEEEHHHHHHHH EQNGSEKNCRRQLAGQKYRVLMQFGDQLGDFVQVSANTRQARGALLQQYHDWFGERWWML HCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCEEEEC PNPSYGGWEPAQFNNDYAQPWQTRHDAKRAALEVAR CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure PTPALRSAKAATSSTTAPAGDDNLNAVLWMQRSEEYRAVAEQTYRAAADKLDSALNQPN CCCCCCHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC WDALVPEERGNAATGLKPAVVLDVDETVLDNSPYLARLLRDGKEYDALSWDQWVAEKKAT CCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCC AIPGVVDFAKAANARGITLIYISNRAVHLKDATLANLRSVGLPVADDSVFLGLGTVAQGC CCCHHHHHHHHCCCCCEEEEEECCCEEEECCHHHHHHHHCCCCCCCCCEEEEHHHHHHHH EQNGSEKNCRRQLAGQKYRVLMQFGDQLGDFVQVSANTRQARGALLQQYHDWFGERWWML HCCCCHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCEEEEC PNPSYGGWEPAQFNNDYAQPWQTRHDAKRAALEVAR CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1715322; 7542800 [H]