| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is 84621837
Identifier: 84621837
GI number: 84621837
Start: 190785
End: 191780
Strand: Direct
Name: 84621837
Synonym: XOO_0180
Alternate gene names: NA
Gene position: 190785-191780 (Clockwise)
Preceding gene: 84621836
Following gene: 84621839
Centisome position: 3.86
GC content: 61.65
Gene sequence:
>996_bases TTGGGCGAGTTGCAGATCGAGACCCCGCGCGACCGCGCGGGCACGTTCGCGCCACAGTTGGTGAAGAAGCGCCAGGTGCG GCTGGCGGGGATGGAGGAGAAGATTCTGGCGTTGTACGCGCGCGGCATGACCACGCGCGACATCGAGTCTGCGCTGGTGG ACGTGTATGGGGTGGAGATATCGCATGGGTTGATCGCACAGATGACCGACGCGGTGCTGGAGGAGGCGCGGGCATGGCAA TCGAGGCCGCTGGAGGCGATCTATCCGATCGTGTGGCTGGACGGCATCGTGGTGAAGGTGCAGCACAACAAGCAGGTCAT CAACAAGGCCGCGCACGTGGTGCTGGGGGTCAATCTGCGCGGGGAGAAGGAAGTGCTTGGCCTGTGGTTGGCTGAACACG AGGGCGCCAAATACTGGCTGTCGGTGTTGACCGAACTGCGTCATCGCGGCGTGCGCGACATCTACATCGCCTGCATGGAT GGCTTGAAGGGCCTGCCCGAAGCGGTGCAAGCGGTGTTTCCGCAGACGCTCACGCAACTGTGCATTGTGCATTTGGTGCG GGCCAGCCTGCGCTACGTCAACGCAGGCGACAGCAAGGCGGTTGTGGCTGCGCTCAAGCGCATCTATCAGTCGGCCACGG CGGAAGAAGCGGCGGCGGAACTGGAGGCGCTGGACACGCAGTGGGGCGACAAATACCGTGCGGTGGTCCGCTTGTGGCGG GGCAACTGGGACAACATCATCCCGTTCTTGCAGTTCGTGCCGCAGATCCGCAAGGTGATCTACACCACCAATGCCATCGA ATCGTTGAACATGGTCATGCGCAAGCTCACCCGCAACCGGCGTATTTTCCCCAACGACGATTCGGCGCTCAAATCGTTGT TTTTGGCCGTGCGCGAGGCATCGAAGAACTGGCGGTCCATCCATCACTGGAAACCGGCTCTGCAAAGCTTCCAGGTGATG TTCGGCGAAGAACGCGTGCCGATGAATGCGCTATGA
Upstream 100 bases:
>100_bases CTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGCCCTGCGTGATGTCACCATGTTCACCGCTGAAAGTG CGTGCTAATCAGGAAGCGCG
Downstream 100 bases:
>100_bases AAAACCTGGTTACACAGTTGGCTTGACAGACCCAGGTAGGCATCGTCCAGTTGCACGATCCTGCCCAACTTGCGGTTCGC CTCGCGTTGGGTCATGGCCT
Product: IS1113 transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MGELQIETPRDRAGTFAPQLVKKRQVRLAGMEEKILALYARGMTTRDIESALVDVYGVEISHGLIAQMTDAVLEEARAWQ SRPLEAIYPIVWLDGIVVKVQHNKQVINKAAHVVLGVNLRGEKEVLGLWLAEHEGAKYWLSVLTELRHRGVRDIYIACMD GLKGLPEAVQAVFPQTLTQLCIVHLVRASLRYVNAGDSKAVVAALKRIYQSATAEEAAAELEALDTQWGDKYRAVVRLWR GNWDNIIPFLQFVPQIRKVIYTTNAIESLNMVMRKLTRNRRIFPNDDSALKSLFLAVREASKNWRSIHHWKPALQSFQVM FGEERVPMNAL
Sequences:
>Translated_331_residues MGELQIETPRDRAGTFAPQLVKKRQVRLAGMEEKILALYARGMTTRDIESALVDVYGVEISHGLIAQMTDAVLEEARAWQ SRPLEAIYPIVWLDGIVVKVQHNKQVINKAAHVVLGVNLRGEKEVLGLWLAEHEGAKYWLSVLTELRHRGVRDIYIACMD GLKGLPEAVQAVFPQTLTQLCIVHLVRASLRYVNAGDSKAVVAALKRIYQSATAEEAAAELEALDTQWGDKYRAVVRLWR GNWDNIIPFLQFVPQIRKVIYTTNAIESLNMVMRKLTRNRRIFPNDDSALKSLFLAVREASKNWRSIHHWKPALQSFQVM FGEERVPMNAL >Mature_330_residues GELQIETPRDRAGTFAPQLVKKRQVRLAGMEEKILALYARGMTTRDIESALVDVYGVEISHGLIAQMTDAVLEEARAWQS RPLEAIYPIVWLDGIVVKVQHNKQVINKAAHVVLGVNLRGEKEVLGLWLAEHEGAKYWLSVLTELRHRGVRDIYIACMDG LKGLPEAVQAVFPQTLTQLCIVHLVRASLRYVNAGDSKAVVAALKRIYQSATAEEAAAELEALDTQWGDKYRAVVRLWRG NWDNIIPFLQFVPQIRKVIYTTNAIESLNMVMRKLTRNRRIFPNDDSALKSLFLAVREASKNWRSIHHWKPALQSFQVMF GEERVPMNAL
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 37559; Mature: 37428
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: PS01007 TRANSPOSASE_MUTATOR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGELQIETPRDRAGTFAPQLVKKRQVRLAGMEEKILALYARGMTTRDIESALVDVYGVEI CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SHGLIAQMTDAVLEEARAWQSRPLEAIYPIVWLDGIVVKVQHNKQVINKAAHVVLGVNLR HCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHEEEECCCC GEKEVLGLWLAEHEGAKYWLSVLTELRHRGVRDIYIACMDGLKGLPEAVQAVFPQTLTQL CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH CIVHLVRASLRYVNAGDSKAVVAALKRIYQSATAEEAAAELEALDTQWGDKYRAVVRLWR HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH GNWDNIIPFLQFVPQIRKVIYTTNAIESLNMVMRKLTRNRRIFPNDDSALKSLFLAVREA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH SKNWRSIHHWKPALQSFQVMFGEERVPMNAL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure GELQIETPRDRAGTFAPQLVKKRQVRLAGMEEKILALYARGMTTRDIESALVDVYGVEI CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SHGLIAQMTDAVLEEARAWQSRPLEAIYPIVWLDGIVVKVQHNKQVINKAAHVVLGVNLR HCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHEEEECCCC GEKEVLGLWLAEHEGAKYWLSVLTELRHRGVRDIYIACMDGLKGLPEAVQAVFPQTLTQL CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH CIVHLVRASLRYVNAGDSKAVVAALKRIYQSATAEEAAAELEALDTQWGDKYRAVVRLWR HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH GNWDNIIPFLQFVPQIRKVIYTTNAIESLNMVMRKLTRNRRIFPNDDSALKSLFLAVREA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH SKNWRSIHHWKPALQSFQVMFGEERVPMNAL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1849509; 1327271; 11481430; 11481432 [H]