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The map label for this gene is popC [H]

Identifier: 84621767

GI number: 84621767

Start: 116702

End: 118642

Strand: Direct

Name: popC [H]

Synonym: XOO_0110

Alternate gene names: 84621767

Gene position: 116702-118642 (Clockwise)

Preceding gene: 84621766

Following gene: 84621773

Centisome position: 2.36

GC content: 63.27

Gene sequence:

>1941_bases
ATGTTCAATATAAATCGCCTACTGCGCTCTCGCCCGCAAACGGACAACGCCGATCAAGCGCCCGCGCAAGACAGGCCTTC
ACGGCAACCTTCACCCGCACAGGGCTTGCTGAGTCCTCTGCTCGCGCGGCCGCGACGGCGCGAAAGCAGATCAGCGGCAG
ACACGTCGACGCCCAGAAATGCGGCGCAAGGGCGCTTCTCCCGATCGCCTTTGCATCCGTCGAGTCAGCCGGAGGCACTC
GCGGGCGCCTCTTCTGCACCACCGCGCAGCATCGAGCACGACATCGACGATTGGCTTGCGCAAAGCCTACCGATGGCAGA
ACGGATCCCAACGGGCTACAACCTGCACGACGGGTCGAGAGATACGTCGCGGGATGTACTGCAAAGCGCCGCAGAAGCAA
TACGCCGTGCAGCGACCCGCCGCAGCACCGAACTTCTTGTCGACGGCCTCCCTGCCACGAGGCTACCTGACGCGATCGGC
CGGCTCGACGCGCTACAGAAATTGATGCTGCTCTATACCGGGGTTCAGTCGCTGCCAGACAGCCTGGGACAGCTGAGCCA
GCTCCGCCATTTGCAGATCTCTGGCGCGCAGGAGCTGAAAACACTGCCACCCTCGTTGACGCGCCTGTCCAATCTCAGAA
CCCTTCAATTGATGATGGTCCCCTTGGACGAATTGCCCGCAGACCTTGGGCGCATGCAGGGTCTGCGCAGCCTCGCGCTA
GGTGGCGGGCACTATGCGCGTCTGCCGGCCAGCATCGTTGAACTGAGCCGGTTGACCGGTTTGCGCGTGTGGCACTCGTC
GCATTTTCGCGAGTTACCTGAAAACATCGGCCTCATGCAGGGGCTCAGGTCACTGGAGTTGGCATCGAATTCCAAGCTGG
AGCAGCTTCCAGGCAGCCTCACGCAGCTGCATCGGCTGAAGAAACTCGACCTGTCGTCCAACCGCCGGCTGGCGCACTTG
CCTGAGGACATCGGTCAACTGCGCGGCTTGACGGAACTGTCGCTGAAAAGTTGCGCTGCGCTGCGGCAGCTGCCCGGCAG
CGTGGGGGATCTGGCCCAGCTGCAACTGCTGGACCTGCGCGGCACTGGCCTGCAGACCCTTCCACCGTGGCTGGCACGAC
TGCCCGATCGCTGCGACATTAAGGTGTCGGATCATCTGGCAGACCAATTGCAGCAGATCCGCGACCCGGAACGCGCGCAG
CGCGCGGCACAGCGGCTTGCCGACAGGAGACGACACGCGTCCGTGCCGGCGGCGCAACAGGCCGGGGCGTCGTGGAACCG
CGTCCCCGAGTTCACGCGCGTGTTGCGCAGTGTCGATGCCGACCTGGGCGAGCGTTTTGAGAAGTGGACGCAAGGCCTGA
CGCAAAATGCCAGGATCTTCGGCGCATCCATCACATCGGCCGACATGCCCCTGCTGGACCAGGTGGTGGCCGAGGCCATT
CGATCACCCGAATTCCGCAGCACCTTCGGCCAATTCTTGAACGAGCACACCGTCAAGACGCTCAACATGGATGGCATGAC
GCAAGTGGGTGATGGCGGGCCCCGTGTGCGAGGAGACGTCAAAACCGCGTTTGCCGAGATGCTCAAGCACAACATCATGC
ACACGCAGGACCAGGAGACCGCACTGGGCCTGCTGCAGCAAGCCCTTCAAAATTCCGGCCTGGGGCTGGCCAGGGAGAGG
CTGCTGCGCAGCACGAATCAACTCACCGGGCGTGCGGAAATGTGGCCGCCACTGAAGGCCTACATCTCCATGCACGACGT
GGAGGGAAAAGCGGCGCAGGATGCGGCGATCACGTGGGCGATGGCTCAGCTTGACGAAGCGCATGAGGGTGTCATCGGGG
AAGCAGAGGCCAAGCAGGAGTCCGAACAGGCGCAGGCCAACGCGAACCGCTTCATCGAGCGGCGGGCGCGTGTACTGCTC
CGGGAATGGGGCATCCATTAG

Upstream 100 bases:

>100_bases
TTTGATGCGGCGATGGCAGTCGCATCGCAGTAGCCTGCATTCTTTCAGTAGCCTGCACTCTTTAGCGCTGCAGCCAGCCG
ACCAAGCAGGGTGTATCTCC

Downstream 100 bases:

>100_bases
AGGCCTAGCGTCCGGCGATGTCACTCCGCAGTTAACTGGCAGCACGACGATTGCGCGCGACATGGCGTTAGGCACACGAG
CGTTAGCCAAAGCGAAATCG

Product: hrp-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 646; Mature: 646

Protein sequence:

>646_residues
MFNINRLLRSRPQTDNADQAPAQDRPSRQPSPAQGLLSPLLARPRRRESRSAADTSTPRNAAQGRFSRSPLHPSSQPEAL
AGASSAPPRSIEHDIDDWLAQSLPMAERIPTGYNLHDGSRDTSRDVLQSAAEAIRRAATRRSTELLVDGLPATRLPDAIG
RLDALQKLMLLYTGVQSLPDSLGQLSQLRHLQISGAQELKTLPPSLTRLSNLRTLQLMMVPLDELPADLGRMQGLRSLAL
GGGHYARLPASIVELSRLTGLRVWHSSHFRELPENIGLMQGLRSLELASNSKLEQLPGSLTQLHRLKKLDLSSNRRLAHL
PEDIGQLRGLTELSLKSCAALRQLPGSVGDLAQLQLLDLRGTGLQTLPPWLARLPDRCDIKVSDHLADQLQQIRDPERAQ
RAAQRLADRRRHASVPAAQQAGASWNRVPEFTRVLRSVDADLGERFEKWTQGLTQNARIFGASITSADMPLLDQVVAEAI
RSPEFRSTFGQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKHNIMHTQDQETALGLLQQALQNSGLGLARER
LLRSTNQLTGRAEMWPPLKAYISMHDVEGKAAQDAAITWAMAQLDEAHEGVIGEAEAKQESEQAQANANRFIERRARVLL
REWGIH

Sequences:

>Translated_646_residues
MFNINRLLRSRPQTDNADQAPAQDRPSRQPSPAQGLLSPLLARPRRRESRSAADTSTPRNAAQGRFSRSPLHPSSQPEAL
AGASSAPPRSIEHDIDDWLAQSLPMAERIPTGYNLHDGSRDTSRDVLQSAAEAIRRAATRRSTELLVDGLPATRLPDAIG
RLDALQKLMLLYTGVQSLPDSLGQLSQLRHLQISGAQELKTLPPSLTRLSNLRTLQLMMVPLDELPADLGRMQGLRSLAL
GGGHYARLPASIVELSRLTGLRVWHSSHFRELPENIGLMQGLRSLELASNSKLEQLPGSLTQLHRLKKLDLSSNRRLAHL
PEDIGQLRGLTELSLKSCAALRQLPGSVGDLAQLQLLDLRGTGLQTLPPWLARLPDRCDIKVSDHLADQLQQIRDPERAQ
RAAQRLADRRRHASVPAAQQAGASWNRVPEFTRVLRSVDADLGERFEKWTQGLTQNARIFGASITSADMPLLDQVVAEAI
RSPEFRSTFGQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKHNIMHTQDQETALGLLQQALQNSGLGLARER
LLRSTNQLTGRAEMWPPLKAYISMHDVEGKAAQDAAITWAMAQLDEAHEGVIGEAEAKQESEQAQANANRFIERRARVLL
REWGIH
>Mature_646_residues
MFNINRLLRSRPQTDNADQAPAQDRPSRQPSPAQGLLSPLLARPRRRESRSAADTSTPRNAAQGRFSRSPLHPSSQPEAL
AGASSAPPRSIEHDIDDWLAQSLPMAERIPTGYNLHDGSRDTSRDVLQSAAEAIRRAATRRSTELLVDGLPATRLPDAIG
RLDALQKLMLLYTGVQSLPDSLGQLSQLRHLQISGAQELKTLPPSLTRLSNLRTLQLMMVPLDELPADLGRMQGLRSLAL
GGGHYARLPASIVELSRLTGLRVWHSSHFRELPENIGLMQGLRSLELASNSKLEQLPGSLTQLHRLKKLDLSSNRRLAHL
PEDIGQLRGLTELSLKSCAALRQLPGSVGDLAQLQLLDLRGTGLQTLPPWLARLPDRCDIKVSDHLADQLQQIRDPERAQ
RAAQRLADRRRHASVPAAQQAGASWNRVPEFTRVLRSVDADLGERFEKWTQGLTQNARIFGASITSADMPLLDQVVAEAI
RSPEFRSTFGQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKHNIMHTQDQETALGLLQQALQNSGLGLARER
LLRSTNQLTGRAEMWPPLKAYISMHDVEGKAAQDAAITWAMAQLDEAHEGVIGEAEAKQESEQAQANANRFIERRARVLL
REWGIH

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI95113664, Length=237, Percent_Identity=35.8649789029536, Blast_Score=106, Evalue=9e-23,
Organism=Homo sapiens, GI55770895, Length=252, Percent_Identity=30.952380952381, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI8923909, Length=252, Percent_Identity=30.952380952381, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI16904383, Length=329, Percent_Identity=28.2674772036474, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI122937315, Length=251, Percent_Identity=31.4741035856574, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI110825984, Length=271, Percent_Identity=32.1033210332103, Blast_Score=84, Evalue=5e-16,
Organism=Homo sapiens, GI197333706, Length=212, Percent_Identity=31.6037735849057, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI34222199, Length=212, Percent_Identity=31.6037735849057, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI187829877, Length=234, Percent_Identity=29.0598290598291, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI62241040, Length=234, Percent_Identity=29.0598290598291, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI187829871, Length=234, Percent_Identity=29.0598290598291, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI41281398, Length=219, Percent_Identity=32.4200913242009, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI238908508, Length=241, Percent_Identity=26.5560165975104, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI45827731, Length=296, Percent_Identity=33.1081081081081, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI45827729, Length=296, Percent_Identity=33.1081081081081, Blast_Score=77, Evalue=7e-14,
Organism=Homo sapiens, GI190014581, Length=264, Percent_Identity=26.8939393939394, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI61742784, Length=226, Percent_Identity=34.9557522123894, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI19923729, Length=252, Percent_Identity=25.7936507936508, Blast_Score=73, Evalue=8e-13,
Organism=Homo sapiens, GI61742786, Length=226, Percent_Identity=34.9557522123894, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI6912638, Length=204, Percent_Identity=32.3529411764706, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI21389431, Length=219, Percent_Identity=28.7671232876712, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI21361633, Length=281, Percent_Identity=28.8256227758007, Blast_Score=70, Evalue=8e-12,
Organism=Homo sapiens, GI194394161, Length=220, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI157743290, Length=174, Percent_Identity=30.4597701149425, Blast_Score=67, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71991525, Length=226, Percent_Identity=34.9557522123894, Blast_Score=101, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71991531, Length=231, Percent_Identity=34.1991341991342, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71993778, Length=274, Percent_Identity=29.5620437956204, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71993783, Length=274, Percent_Identity=29.5620437956204, Blast_Score=81, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71981152, Length=242, Percent_Identity=30.1652892561983, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71981160, Length=242, Percent_Identity=30.1652892561983, Blast_Score=70, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25143890, Length=245, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI19922294, Length=292, Percent_Identity=30.1369863013699, Blast_Score=100, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24650330, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI281362657, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=8e-20,
Organism=Drosophila melanogaster, GI281362655, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=9e-20,
Organism=Drosophila melanogaster, GI116007092, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=1e-19,
Organism=Drosophila melanogaster, GI281362651, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=1e-19,
Organism=Drosophila melanogaster, GI281362653, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24650334, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24650332, Length=276, Percent_Identity=30.7971014492754, Blast_Score=96, Evalue=1e-19,
Organism=Drosophila melanogaster, GI62472958, Length=276, Percent_Identity=30.7971014492754, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24650336, Length=276, Percent_Identity=30.7971014492754, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI221379725, Length=227, Percent_Identity=31.2775330396476, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221379722, Length=227, Percent_Identity=31.2775330396476, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI161078260, Length=237, Percent_Identity=28.6919831223629, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161078262, Length=237, Percent_Identity=29.535864978903, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45551891, Length=237, Percent_Identity=28.6919831223629, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358045, Length=237, Percent_Identity=28.6919831223629, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161078264, Length=237, Percent_Identity=28.6919831223629, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 71386; Mature: 71386

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNINRLLRSRPQTDNADQAPAQDRPSRQPSPAQGLLSPLLARPRRRESRSAADTSTPRN
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCH
AAQGRFSRSPLHPSSQPEALAGASSAPPRSIEHDIDDWLAQSLPMAERIPTGYNLHDGSR
HHCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCC
DTSRDVLQSAAEAIRRAATRRSTELLVDGLPATRLPDAIGRLDALQKLMLLYTGVQSLPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLGQLSQLRHLQISGAQELKTLPPSLTRLSNLRTLQLMMVPLDELPADLGRMQGLRSLAL
HHHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GGGHYARLPASIVELSRLTGLRVWHSSHFRELPENIGLMQGLRSLELASNSKLEQLPGSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHH
TQLHRLKKLDLSSNRRLAHLPEDIGQLRGLTELSLKSCAALRQLPGSVGDLAQLQLLDLR
HHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHEEECC
GTGLQTLPPWLARLPDRCDIKVSDHLADQLQQIRDPERAQRAAQRLADRRRHASVPAAQQ
CCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH
AGASWNRVPEFTRVLRSVDADLGERFEKWTQGLTQNARIFGASITSADMPLLDQVVAEAI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH
RSPEFRSTFGQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKHNIMHTQDQET
CCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
ALGLLQQALQNSGLGLARERLLRSTNQLTGRAEMWPPLKAYISMHDVEGKAAQDAAITWA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
MAQLDEAHEGVIGEAEAKQESEQAQANANRFIERRARVLLREWGIH
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFNINRLLRSRPQTDNADQAPAQDRPSRQPSPAQGLLSPLLARPRRRESRSAADTSTPRN
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCH
AAQGRFSRSPLHPSSQPEALAGASSAPPRSIEHDIDDWLAQSLPMAERIPTGYNLHDGSR
HHCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCC
DTSRDVLQSAAEAIRRAATRRSTELLVDGLPATRLPDAIGRLDALQKLMLLYTGVQSLPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SLGQLSQLRHLQISGAQELKTLPPSLTRLSNLRTLQLMMVPLDELPADLGRMQGLRSLAL
HHHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GGGHYARLPASIVELSRLTGLRVWHSSHFRELPENIGLMQGLRSLELASNSKLEQLPGSL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHH
TQLHRLKKLDLSSNRRLAHLPEDIGQLRGLTELSLKSCAALRQLPGSVGDLAQLQLLDLR
HHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHEEECC
GTGLQTLPPWLARLPDRCDIKVSDHLADQLQQIRDPERAQRAAQRLADRRRHASVPAAQQ
CCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH
AGASWNRVPEFTRVLRSVDADLGERFEKWTQGLTQNARIFGASITSADMPLLDQVVAEAI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH
RSPEFRSTFGQFLNEHTVKTLNMDGMTQVGDGGPRVRGDVKTAFAEMLKHNIMHTQDQET
CCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
ALGLLQQALQNSGLGLARERLLRSTNQLTGRAEMWPPLKAYISMHDVEGKAAQDAAITWA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
MAQLDEAHEGVIGEAEAKQESEQAQANANRFIERRARVLLREWGIH
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]