Click here to switch to the map view.

The map label for this gene is 84490204

Identifier: 84490204

GI number: 84490204

Start: 1597167

End: 1598396

Strand: Direct

Name: 84490204

Synonym: Msp_1422

Alternate gene names: NA

Gene position: 1597167-1598396 (Clockwise)

Preceding gene: 84490200

Following gene: 84490205

Centisome position: 90.37

GC content: 27.32

Gene sequence:

>1230_bases
ATGAAATGCTATATTACAACTACAAGTTTCGGATTTATAGCTACGAATCAAGATAATGAAATAATTGACTACAGAGTTTT
TGAAAAAAAACAAGTTGAAAAACTACTAGAAATACAGAAAAAACAATTATTACAAGAAGAAGTAGAGTTAATTGAATCAG
TTGGTTTATATTATGATGAAATTGTAATAGAAACTAGTAAGGCTCGAAGTATATATTCACACTTAAATCAGTATAATAAA
ATCATTACAGAAAATACAACAAAAACTGGAAAATACATAAGAAACAATTTAGAAGAGATTTTAACAGATATTCCCGAGCT
AAAAAAGGTTGATGTACGTAGAAATTTAAATAATACATATACCCAAATAGCTAAAGATAAAATTAGAGAATCTATTAAAA
CTAATGATGTAATGATCGTAGAAACAATAAATTCACTTGAAGAAATAGAAGAAACTACAGGTAAATTAATTGAACGTTTA
AGAGAATGGACAATAACATATGTTCCAGAGTTAGATAAGATTCATAATCATGAATTATATTCTAAAATCATTGCTTTAGA
AACAACACGTGAAAATATTAAAAATAGTTCTTTAATTGAAAATACACAGATTGAAATACTAGATAGTAACGATGTTGAAA
TGACTGAAGAAGATTTATCAATAATTAAAGAATTTGCTACATCAATTTATTCATTATATCAGACAAAGAATACTCTTGAA
GAATTTATCCAGAATAAGATAAAAGAAGTAGCTCCTAATTTATATGATGTTGCAGGTGCTAACCTTGCAGCTAAATTAAT
TGCACATATGAATGGATTAGAACAACTTGCTAAATTACCATCAAGTACTGTTCAAATTATTGGTGCTGAAAAGGCAACAT
TTAGACATTTGAAAACTGGAGAAAATCCACCCAAACATGGATTAATCTTCCAACATCCAAGTATTCGTGGTTCAAATTGG
TGGATACGTGGAAAATTAGCCCGTGCTGTAGCTGCTAAAATTACTATTGCAGCAAGAAAAGATGCATTTAGTAATGATTA
TGATGCTAATTTGAAGATTGAACTTGATGAGAAAATTGAGAAAATAAAAAAGGATCATCCATTCCCCGAAAGAAAAAAGA
AAAAAGAGAATAAGGATAAAAAAGGTAAAAAAAGTAAAAAAAATCGTAAAGAACGTAAAAAAAAGAAAAATAGGAAGAAA
AAATTAAGAAAAGGAGAATATTCCTATTAG

Upstream 100 bases:

>100_bases
TATATTTATTTCTGTATTTTCATGCTTATAAATTAAAAATAGTTTATTGTTATGACAAGTTGTTAACATTAATAAATATA
GAAAATTAAAAGTATTATAC

Downstream 100 bases:

>100_bases
GGAGTTGATATTATATGCAGATAAAAAATATTGGTGAAAATGTATATCAAATAGATAATCAAATTGCTACTGTAAATCTA
ACTCCTACAAAACAAGTGTA

Product: ribosomal biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MKCYITTTSFGFIATNQDNEIIDYRVFEKKQVEKLLEIQKKQLLQEEVELIESVGLYYDEIVIETSKARSIYSHLNQYNK
IITENTTKTGKYIRNNLEEILTDIPELKKVDVRRNLNNTYTQIAKDKIRESIKTNDVMIVETINSLEEIEETTGKLIERL
REWTITYVPELDKIHNHELYSKIIALETTRENIKNSSLIENTQIEILDSNDVEMTEEDLSIIKEFATSIYSLYQTKNTLE
EFIQNKIKEVAPNLYDVAGANLAAKLIAHMNGLEQLAKLPSSTVQIIGAEKATFRHLKTGENPPKHGLIFQHPSIRGSNW
WIRGKLARAVAAKITIAARKDAFSNDYDANLKIELDEKIEKIKKDHPFPERKKKKENKDKKGKKSKKNRKERKKKKNRKK
KLRKGEYSY

Sequences:

>Translated_409_residues
MKCYITTTSFGFIATNQDNEIIDYRVFEKKQVEKLLEIQKKQLLQEEVELIESVGLYYDEIVIETSKARSIYSHLNQYNK
IITENTTKTGKYIRNNLEEILTDIPELKKVDVRRNLNNTYTQIAKDKIRESIKTNDVMIVETINSLEEIEETTGKLIERL
REWTITYVPELDKIHNHELYSKIIALETTRENIKNSSLIENTQIEILDSNDVEMTEEDLSIIKEFATSIYSLYQTKNTLE
EFIQNKIKEVAPNLYDVAGANLAAKLIAHMNGLEQLAKLPSSTVQIIGAEKATFRHLKTGENPPKHGLIFQHPSIRGSNW
WIRGKLARAVAAKITIAARKDAFSNDYDANLKIELDEKIEKIKKDHPFPERKKKKENKDKKGKKSKKNRKERKKKKNRKK
KLRKGEYSY
>Mature_409_residues
MKCYITTTSFGFIATNQDNEIIDYRVFEKKQVEKLLEIQKKQLLQEEVELIESVGLYYDEIVIETSKARSIYSHLNQYNK
IITENTTKTGKYIRNNLEEILTDIPELKKVDVRRNLNNTYTQIAKDKIRESIKTNDVMIVETINSLEEIEETTGKLIERL
REWTITYVPELDKIHNHELYSKIIALETTRENIKNSSLIENTQIEILDSNDVEMTEEDLSIIKEFATSIYSLYQTKNTLE
EFIQNKIKEVAPNLYDVAGANLAAKLIAHMNGLEQLAKLPSSTVQIIGAEKATFRHLKTGENPPKHGLIFQHPSIRGSNW
WIRGKLARAVAAKITIAARKDAFSNDYDANLKIELDEKIEKIKKDHPFPERKKKKENKDKKGKKSKKNRKERKKKKNRKK
KLRKGEYSY

Specific function: Unknown

COG id: COG1498

COG function: function code J; Protein implicated in ribosomal biogenesis, Nop56p homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Nop domain [H]

Homologues:

Organism=Homo sapiens, GI7706254, Length=278, Percent_Identity=32.0143884892086, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI32483374, Length=280, Percent_Identity=32.5, Blast_Score=135, Evalue=9e-32,
Organism=Homo sapiens, GI221136939, Length=148, Percent_Identity=29.7297297297297, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562296, Length=303, Percent_Identity=30.03300330033, Blast_Score=144, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17509449, Length=288, Percent_Identity=31.9444444444444, Blast_Score=139, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17510923, Length=252, Percent_Identity=24.2063492063492, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6324886, Length=364, Percent_Identity=31.043956043956, Blast_Score=135, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6323226, Length=282, Percent_Identity=29.0780141843972, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6321528, Length=177, Percent_Identity=29.9435028248588, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17137636, Length=280, Percent_Identity=31.4285714285714, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI28572126, Length=242, Percent_Identity=33.0578512396694, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI21357435, Length=231, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012976
- InterPro:   IPR002687 [H]

Pfam domain/function: PF01798 Nop; PF08060 NOSIC [H]

EC number: NA

Molecular weight: Translated: 47606; Mature: 47606

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCYITTTSFGFIATNQDNEIIDYRVFEKKQVEKLLEIQKKQLLQEEVELIESVGLYYDE
CEEEEEECCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVIETSKARSIYSHLNQYNKIITENTTKTGKYIRNNLEEILTDIPELKKVDVRRNLNNTY
HHEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
TQIAKDKIRESIKTNDVMIVETINSLEEIEETTGKLIERLREWTITYVPELDKIHNHELY
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHH
SKIIALETTRENIKNSSLIENTQIEILDSNDVEMTEEDLSIIKEFATSIYSLYQTKNTLE
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EFIQNKIKEVAPNLYDVAGANLAAKLIAHMNGLEQLAKLPSSTVQIIGAEKATFRHLKTG
HHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHHHCC
ENPPKHGLIFQHPSIRGSNWWIRGKLARAVAAKITIAARKDAFSNDYDANLKIELDEKIE
CCCCCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHEEHHCCCCCCCCCCEEEEHHHHHH
KIKKDHPFPERKKKKENKDKKGKKSKKNRKERKKKKNRKKKLRKGEYSY
HHHHCCCCCHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKCYITTTSFGFIATNQDNEIIDYRVFEKKQVEKLLEIQKKQLLQEEVELIESVGLYYDE
CEEEEEECCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVIETSKARSIYSHLNQYNKIITENTTKTGKYIRNNLEEILTDIPELKKVDVRRNLNNTY
HHEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
TQIAKDKIRESIKTNDVMIVETINSLEEIEETTGKLIERLREWTITYVPELDKIHNHELY
HHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHH
SKIIALETTRENIKNSSLIENTQIEILDSNDVEMTEEDLSIIKEFATSIYSLYQTKNTLE
HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EFIQNKIKEVAPNLYDVAGANLAAKLIAHMNGLEQLAKLPSSTVQIIGAEKATFRHLKTG
HHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHHHCC
ENPPKHGLIFQHPSIRGSNWWIRGKLARAVAAKITIAARKDAFSNDYDANLKIELDEKIE
CCCCCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHEEHHCCCCCCCCCCEEEEHHHHHH
KIKKDHPFPERKKKKENKDKKGKKSKKNRKERKKKKNRKKKLRKGEYSY
HHHHCCCCCHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]