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The map label for this gene is tfe

Identifier: 84490060

GI number: 84490060

Start: 1437195

End: 1437734

Strand: Direct

Name: tfe

Synonym: Msp_1272

Alternate gene names: 84490060

Gene position: 1437195-1437734 (Clockwise)

Preceding gene: 84490059

Following gene: 84490061

Centisome position: 81.32

GC content: 25.74

Gene sequence:

>540_bases
ATGGCTAAGAAAAAAGTTAAATATACATTTGATTATGATTCTAAATTTTTAAATGAACACAATGTTAAAAAACTAGCATA
TGAACTTACTCATGATTCTGATACTAGTAATAAAATATTAGACTGTTTATTTACTGCTGAAGTTACAGATGAACAAATAG
CTGAAGCTACTGGTATTAAATTAAACTTTGTAAGAAAAATATTATACAAATTCTATGATGTGGGTATGGCTAATTATACA
AGAAAAAAAGATCCTGAAACACAATGGTTTACTTATTATTGGAGATTTGATTCAAGAAAAGCTGCACAAATCCTAGAAAA
ACAATACAACCACCATAATCAAGAAATTAAAGAATCAATTGAATATGAAGAAAATAATATGTTTTTTGTATGTCCTAATG
GATGCAGATATCCATTTGATGAAGCTACAGAATTTCAATTTATATGTCCAAGATGTAATGAAAAATTAGAATTTAAAGAT
AACAGTGATCTTATCCATGATCTCAAAAAATTAGAGTCAGCATACAAAATTAATGAATAA

Upstream 100 bases:

>100_bases
AAAAAGATGATTGAAGATTATAGAGATTATTTGAAGTTGTATTAACAAAATTCTAACAATTAAAATATTGTTAGAGACAA
ATAATAAGAGAGATAATATA

Downstream 100 bases:

>100_bases
AAAAAAATTAAACACCTTCTTTTTTTATAACTTCTTTTTTTAATATTAAACAAAAATAGGAAAGTAATTACACATGTCTG
AAGTTGATAAATTAATTAAA

Product: transcription initiation factor E subunit alpha

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MAKKKVKYTFDYDSKFLNEHNVKKLAYELTHDSDTSNKILDCLFTAEVTDEQIAEATGIKLNFVRKILYKFYDVGMANYT
RKKDPETQWFTYYWRFDSRKAAQILEKQYNHHNQEIKESIEYEENNMFFVCPNGCRYPFDEATEFQFICPRCNEKLEFKD
NSDLIHDLKKLESAYKINE

Sequences:

>Translated_179_residues
MAKKKVKYTFDYDSKFLNEHNVKKLAYELTHDSDTSNKILDCLFTAEVTDEQIAEATGIKLNFVRKILYKFYDVGMANYT
RKKDPETQWFTYYWRFDSRKAAQILEKQYNHHNQEIKESIEYEENNMFFVCPNGCRYPFDEATEFQFICPRCNEKLEFKD
NSDLIHDLKKLESAYKINE
>Mature_178_residues
AKKKVKYTFDYDSKFLNEHNVKKLAYELTHDSDTSNKILDCLFTAEVTDEQIAEATGIKLNFVRKILYKFYDVGMANYTR
KKDPETQWFTYYWRFDSRKAAQILEKQYNHHNQEIKESIEYEENNMFFVCPNGCRYPFDEATEFQFICPRCNEKLEFKDN
SDLIHDLKKLESAYKINE

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TFE_METST (Q2NEV4)

Other databases:

- EMBL:   CP000102
- RefSeq:   YP_448292.1
- ProteinModelPortal:   Q2NEV4
- SMR:   Q2NEV4
- STRING:   Q2NEV4
- GeneID:   3856144
- GenomeReviews:   CP000102_GR
- KEGG:   mst:Msp_1272
- NMPDR:   fig|339860.6.peg.1219
- eggNOG:   arNOG08263
- HOGENOM:   HBG508653
- ProtClustDB:   PRK06266
- BioCyc:   MSTA339860:MSP_1272-MONOMER
- HAMAP:   MF_01909
- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF006373
- TIGRFAMs:   TIGR00373

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21533; Mature: 21402

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS51344 HTH_TFE_IIE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKVKYTFDYDSKFLNEHNVKKLAYELTHDSDTSNKILDCLFTAEVTDEQIAEATGIK
CCCCCEEEEECCCHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCH
LNFVRKILYKFYDVGMANYTRKKDPETQWFTYYWRFDSRKAAQILEKQYNHHNQEIKESI
HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCHHHHHHHH
EYEENNMFFVCPNGCRYPFDEATEFQFICPRCNEKLEFKDNSDLIHDLKKLESAYKINE
CCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKKKVKYTFDYDSKFLNEHNVKKLAYELTHDSDTSNKILDCLFTAEVTDEQIAEATGIK
CCCCEEEEECCCHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCH
LNFVRKILYKFYDVGMANYTRKKDPETQWFTYYWRFDSRKAAQILEKQYNHHNQEIKESI
HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCHHHHHHHH
EYEENNMFFVCPNGCRYPFDEATEFQFICPRCNEKLEFKDNSDLIHDLKKLESAYKINE
CCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA