| Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
|---|---|
| Accession | NC_007681 |
| Length | 1,767,403 |
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The map label for this gene is ydcP [H]
Identifier: 84489783
GI number: 84489783
Start: 1131618
End: 1134164
Strand: Direct
Name: ydcP [H]
Synonym: Msp_0984
Alternate gene names: 84489783
Gene position: 1131618-1134164 (Clockwise)
Preceding gene: 84489782
Following gene: 84489785
Centisome position: 64.03
GC content: 27.84
Gene sequence:
>2547_bases ATGGTTTTAACAGAATTATTAGCACCTGCAGGTTCTTATGATATTCTCGTTGTTGCTATTAATGCAGGAGCTGATGCAGT GTATATTGCAGGACATAGATATGGTGCTAGAGCTTTTGCTCATAATTTTACATCAGAAGAACTGGAAAAAGCAGTAGAAT ATGCTCATTTAAATGGATCATCAATACATGTTACTGTAAATACATTGTTTAATACAAAAGAGATTTTGGATGTTCTTAAA TATGTTCAATTCTTATATCGTATAGGTGTAGATGCAGTTATTGTTCAAGATATTGGTCTTGTATATTTAATTCATAAATT CATTCCAGACATGGAAATACATTCATCTACTCAAATGACTCTACGTGATTATACTAGTCTTCTATGGGCTAAGGATGAGG GAGTCAGTAGAGTTATTTTACCACGTGAGATGGAAATTGATGAAATAAAAACTATTTCAGATAAATTAGAAAAAGATAAA ATAGATCTTGATTTAGAAGTTTTTGGTCATGGATCTCTTTGTTATTGTATTTCTGGTGACTGTTATATGTCTTCATTTAT CTCTGGAAGAAGTGCTAATAGAGGTGCATGTGCTCAGCCATGTAGATCTAATTATAAACTTAGATACAATAATCATAGTA TAAGCCATGGATGTTTAATATCTACCCATGATCTTGCCACATATAAAGATGTTAAATCAATTTCTGATGCAGGAATTATG TCATTGAAGATTGAAGGAAGATTAAAGTCTGAGGATTATGTTGCTACTGTTGTAAATGCATATAGAACCATGATTGATAA TATGAATAATGATACTACAGAAATTGCAGCTAAATTAGAGAAGGATTTAGATTTAACATTTAATAGATATTATACTAATG GATATATTTTACATGATACTCCAGGAGAAGTTATGGGAAGAGAAAGTTCATTCCATCAAGGATTATACTTAGGTAAAATC AAATCTATTGAAGGTGAAGAAGTAGATATTGAATTTGAAAATAAAAACCATCCAACACTTCAAAATGGTGATGGTATAGG ATTTAAGCATAACAATCATATACGTGGTATTTATCTTGATACTATTGTTAAACAAGATGAGAATCATATTCTTATAAAAA CTACACGTGATATTCGTGTTGGATCTGAGGTATATATAAGTTATTCTAAGGCACTTCATGATAAACAGAAAAAATATAAG AAAGAGCAGATAAAGCCACATATTCCAATATCATTTGATATTTCAGTTAATAAGAATATGAATTTAACTGTAAATGTTAG TTTCAAAGTCAATAGTGATGTTATTAGTTTTGGTTATAAATCCAATAGTGAACTTGTTGAGGCTATTAATAAACCATTAA CTAATGATCTTATCATTGAACAAATGTCTAAATCTGGTGAAACTCCATTTATTGCCAATAATGTTCGTGTAACTAATTTA CCTGAAAATGTGTTTATGCCTATTGGTAAGTTAAATAAGATACGAAGAAAAGTATTGGATAAGGCTTCTGAAAAATTATT AGAATATTATATTCCAAATAAAAATAAATCAGAGGAAATACGTAAAAATATCAAGAAATACACCAAAGACTGTAAAAATA ATGAACATGGTATAAAACCTGCTAATTATGTTGGACTTAATGTATATGTTGATAACATAGATTTACTAACTATCGCAAAT AGAAATCCATTAAATAGAATATACTTTGATGCATCATTTATCTATGATAATAAAAAAGAATATTTTGATAATATTGAAGA TATATTAAGAGAAGCTTCTTCAATTACTGTGGATAAGGAACTTGTATGGGTATTATCTGCATTTACATCAGATGAAGATT TAGAAAAAATAGTGAAAATATATTCAAATCTTAAAAATGATGGAATAAAACTTTCAATAATGGGTGATTCACCATCACTT ACACGTATATTCCCAGATACTAATGTTTATGGAGCACATAACCTTAACATATGGAACAACTACAGTGTTGCAATGCTTAA TAAAAATAACTTTAAAGGTGCAACAATTTCAAGTGAATTATCAGAAGAAGAAATTAGTCAACTTCTTAGAAAATCAAAAC AATACAATACTAAACTTGAATTGATAGTTCAAGGAAATCAGGAAATCATGGTATCTAAAGATGATTTCACAAATCTTAAT GGAAACTTTGATTTGGATATTAAAACTGATGAGTATGTTGTATTAGATGATAAGGCAAATAAGGCTAAATTTAAGATATA CTTTGATTATAATAAACAAAGTCACTTCTTTAACAATGACATGTTATGTTTAATTGATGAAATTGATAAGATTAAGCAAA TGGGTATTGAAAATATTACTCTTGATTGTAGATTTACAAAGGAAAAATACACCTCCAAAGTAATTTCATTGTATATTCAA AGACTAAGAGAGAATAATCCTAAAAGAAAGTATTCTGAAAGTATAGACAATATTTCCTATTCAAAATTAAATAAAGGAAA CTTCCTAAATTCAAGAATATTAGAAGATAAAAAAAGTAAAAGGAAAATTAGAAATAATAGAAAGTAA
Upstream 100 bases:
>100_bases ATCATTAAAAATAGATGTATATATTATATTGAAGTTTTAGAATAACTAATTTTAAATTTTCTTTTTATAACAAACAAATA CTTTAGAGGTTAATATTAAA
Downstream 100 bases:
>100_bases AACTCTCTTTTTCTATACTATTTTTTTATATAATAAAATAACATTTCTTTTATTAAAATTAAGGATAGTGGATTTTTTAT AGAAATCAAATCCCTTATTT
Product: peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MVLTELLAPAGSYDILVVAINAGADAVYIAGHRYGARAFAHNFTSEELEKAVEYAHLNGSSIHVTVNTLFNTKEILDVLK YVQFLYRIGVDAVIVQDIGLVYLIHKFIPDMEIHSSTQMTLRDYTSLLWAKDEGVSRVILPREMEIDEIKTISDKLEKDK IDLDLEVFGHGSLCYCISGDCYMSSFISGRSANRGACAQPCRSNYKLRYNNHSISHGCLISTHDLATYKDVKSISDAGIM SLKIEGRLKSEDYVATVVNAYRTMIDNMNNDTTEIAAKLEKDLDLTFNRYYTNGYILHDTPGEVMGRESSFHQGLYLGKI KSIEGEEVDIEFENKNHPTLQNGDGIGFKHNNHIRGIYLDTIVKQDENHILIKTTRDIRVGSEVYISYSKALHDKQKKYK KEQIKPHIPISFDISVNKNMNLTVNVSFKVNSDVISFGYKSNSELVEAINKPLTNDLIIEQMSKSGETPFIANNVRVTNL PENVFMPIGKLNKIRRKVLDKASEKLLEYYIPNKNKSEEIRKNIKKYTKDCKNNEHGIKPANYVGLNVYVDNIDLLTIAN RNPLNRIYFDASFIYDNKKEYFDNIEDILREASSITVDKELVWVLSAFTSDEDLEKIVKIYSNLKNDGIKLSIMGDSPSL TRIFPDTNVYGAHNLNIWNNYSVAMLNKNNFKGATISSELSEEEISQLLRKSKQYNTKLELIVQGNQEIMVSKDDFTNLN GNFDLDIKTDEYVVLDDKANKAKFKIYFDYNKQSHFFNNDMLCLIDEIDKIKQMGIENITLDCRFTKEKYTSKVISLYIQ RLRENNPKRKYSESIDNISYSKLNKGNFLNSRILEDKKSKRKIRNNRK
Sequences:
>Translated_848_residues MVLTELLAPAGSYDILVVAINAGADAVYIAGHRYGARAFAHNFTSEELEKAVEYAHLNGSSIHVTVNTLFNTKEILDVLK YVQFLYRIGVDAVIVQDIGLVYLIHKFIPDMEIHSSTQMTLRDYTSLLWAKDEGVSRVILPREMEIDEIKTISDKLEKDK IDLDLEVFGHGSLCYCISGDCYMSSFISGRSANRGACAQPCRSNYKLRYNNHSISHGCLISTHDLATYKDVKSISDAGIM SLKIEGRLKSEDYVATVVNAYRTMIDNMNNDTTEIAAKLEKDLDLTFNRYYTNGYILHDTPGEVMGRESSFHQGLYLGKI KSIEGEEVDIEFENKNHPTLQNGDGIGFKHNNHIRGIYLDTIVKQDENHILIKTTRDIRVGSEVYISYSKALHDKQKKYK KEQIKPHIPISFDISVNKNMNLTVNVSFKVNSDVISFGYKSNSELVEAINKPLTNDLIIEQMSKSGETPFIANNVRVTNL PENVFMPIGKLNKIRRKVLDKASEKLLEYYIPNKNKSEEIRKNIKKYTKDCKNNEHGIKPANYVGLNVYVDNIDLLTIAN RNPLNRIYFDASFIYDNKKEYFDNIEDILREASSITVDKELVWVLSAFTSDEDLEKIVKIYSNLKNDGIKLSIMGDSPSL TRIFPDTNVYGAHNLNIWNNYSVAMLNKNNFKGATISSELSEEEISQLLRKSKQYNTKLELIVQGNQEIMVSKDDFTNLN GNFDLDIKTDEYVVLDDKANKAKFKIYFDYNKQSHFFNNDMLCLIDEIDKIKQMGIENITLDCRFTKEKYTSKVISLYIQ RLRENNPKRKYSESIDNISYSKLNKGNFLNSRILEDKKSKRKIRNNRK >Mature_848_residues MVLTELLAPAGSYDILVVAINAGADAVYIAGHRYGARAFAHNFTSEELEKAVEYAHLNGSSIHVTVNTLFNTKEILDVLK YVQFLYRIGVDAVIVQDIGLVYLIHKFIPDMEIHSSTQMTLRDYTSLLWAKDEGVSRVILPREMEIDEIKTISDKLEKDK IDLDLEVFGHGSLCYCISGDCYMSSFISGRSANRGACAQPCRSNYKLRYNNHSISHGCLISTHDLATYKDVKSISDAGIM SLKIEGRLKSEDYVATVVNAYRTMIDNMNNDTTEIAAKLEKDLDLTFNRYYTNGYILHDTPGEVMGRESSFHQGLYLGKI KSIEGEEVDIEFENKNHPTLQNGDGIGFKHNNHIRGIYLDTIVKQDENHILIKTTRDIRVGSEVYISYSKALHDKQKKYK KEQIKPHIPISFDISVNKNMNLTVNVSFKVNSDVISFGYKSNSELVEAINKPLTNDLIIEQMSKSGETPFIANNVRVTNL PENVFMPIGKLNKIRRKVLDKASEKLLEYYIPNKNKSEEIRKNIKKYTKDCKNNEHGIKPANYVGLNVYVDNIDLLTIAN RNPLNRIYFDASFIYDNKKEYFDNIEDILREASSITVDKELVWVLSAFTSDEDLEKIVKIYSNLKNDGIKLSIMGDSPSL TRIFPDTNVYGAHNLNIWNNYSVAMLNKNNFKGATISSELSEEEISQLLRKSKQYNTKLELIVQGNQEIMVSKDDFTNLN GNFDLDIKTDEYVVLDDKANKAKFKIYFDYNKQSHFFNNDMLCLIDEIDKIKQMGIENITLDCRFTKEKYTSKVISLYIQ RLRENNPKRKYSESIDNISYSKLNKGNFLNSRILEDKKSKRKIRNNRK
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI87081910, Length=542, Percent_Identity=30.0738007380074, Blast_Score=209, Evalue=8e-55, Organism=Escherichia coli, GI1788397, Length=348, Percent_Identity=28.448275862069, Blast_Score=139, Evalue=1e-33, Organism=Escherichia coli, GI1789548, Length=303, Percent_Identity=30.6930693069307, Blast_Score=123, Evalue=5e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020988 - InterPro: IPR001539 [H]
Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 97145; Mature: 97145
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: PS01276 PEPTIDASE_U32
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLTELLAPAGSYDILVVAINAGADAVYIAGHRYGARAFAHNFTSEELEKAVEYAHLNGS CCHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHCCCCC SIHVTVNTLFNTKEILDVLKYVQFLYRIGVDAVIVQDIGLVYLIHKFIPDMEIHSSTQMT EEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCEECCCCCHH LRDYTSLLWAKDEGVSRVILPREMEIDEIKTISDKLEKDKIDLDLEVFGHGSLCYCISGD HHHHHHHEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCC CYMSSFISGRSANRGACAQPCRSNYKLRYNNHSISHGCLISTHDLATYKDVKSISDAGIM HHHHHHHCCCCCCCCCCCCHHCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHCCCCCEE SLKIEGRLKSEDYVATVVNAYRTMIDNMNNDTTEIAAKLEKDLDLTFNRYYTNGYILHDT EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECCEEEECC PGEVMGRESSFHQGLYLGKIKSIEGEEVDIEFENKNHPTLQNGDGIGFKHNNHIRGIYLD CHHHCCCCCCHHCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE TIVKQDENHILIKTTRDIRVGSEVYISYSKALHDKQKKYKKEQIKPHIPISFDISVNKNM EHCCCCCCEEEEEEECCEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC NLTVNVSFKVNSDVISFGYKSNSELVEAINKPLTNDLIIEQMSKSGETPFIANNVRVTNL EEEEEEEEEECCCEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCEEEECC PENVFMPIGKLNKIRRKVLDKASEKLLEYYIPNKNKSEEIRKNIKKYTKDCKNNEHGIKP CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC ANYVGLNVYVDNIDLLTIANRNPLNRIYFDASFIYDNKKEYFDNIEDILREASSITVDKE CCEEEEEEEEECEEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCEECHH LVWVLSAFTSDEDLEKIVKIYSNLKNDGIKLSIMGDSPSLTRIFPDTNVYGAHNLNIWNN HHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCEECEEECC YSVAMLNKNNFKGATISSELSEEEISQLLRKSKQYNTKLELIVQGNQEIMVSKDDFTNLN EEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCC GNFDLDIKTDEYVVLDDKANKAKFKIYFDYNKQSHFFNNDMLCLIDEIDKIKQMGIENIT CCEEEEEECCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHCCCCEEE LDCRFTKEKYTSKVISLYIQRLRENNPKRKYSESIDNISYSKLNKGNFLNSRILEDKKSK EEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHH RKIRNNRK HHHHCCCC >Mature Secondary Structure MVLTELLAPAGSYDILVVAINAGADAVYIAGHRYGARAFAHNFTSEELEKAVEYAHLNGS CCHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHCCCCC SIHVTVNTLFNTKEILDVLKYVQFLYRIGVDAVIVQDIGLVYLIHKFIPDMEIHSSTQMT EEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCEECCCCCHH LRDYTSLLWAKDEGVSRVILPREMEIDEIKTISDKLEKDKIDLDLEVFGHGSLCYCISGD HHHHHHHEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCC CYMSSFISGRSANRGACAQPCRSNYKLRYNNHSISHGCLISTHDLATYKDVKSISDAGIM HHHHHHHCCCCCCCCCCCCHHCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHCCCCCEE SLKIEGRLKSEDYVATVVNAYRTMIDNMNNDTTEIAAKLEKDLDLTFNRYYTNGYILHDT EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECCEEEECC PGEVMGRESSFHQGLYLGKIKSIEGEEVDIEFENKNHPTLQNGDGIGFKHNNHIRGIYLD CHHHCCCCCCHHCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE TIVKQDENHILIKTTRDIRVGSEVYISYSKALHDKQKKYKKEQIKPHIPISFDISVNKNM EHCCCCCCEEEEEEECCEECCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC NLTVNVSFKVNSDVISFGYKSNSELVEAINKPLTNDLIIEQMSKSGETPFIANNVRVTNL EEEEEEEEEECCCEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEECCEEEECC PENVFMPIGKLNKIRRKVLDKASEKLLEYYIPNKNKSEEIRKNIKKYTKDCKNNEHGIKP CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC ANYVGLNVYVDNIDLLTIANRNPLNRIYFDASFIYDNKKEYFDNIEDILREASSITVDKE CCEEEEEEEEECEEEEEEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCEECHH LVWVLSAFTSDEDLEKIVKIYSNLKNDGIKLSIMGDSPSLTRIFPDTNVYGAHNLNIWNN HHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCEECEEECC YSVAMLNKNNFKGATISSELSEEEISQLLRKSKQYNTKLELIVQGNQEIMVSKDDFTNLN EEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCC GNFDLDIKTDEYVVLDDKANKAKFKIYFDYNKQSHFFNNDMLCLIDEIDKIKQMGIENIT CCEEEEEECCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHCCCCEEE LDCRFTKEKYTSKVISLYIQRLRENNPKRKYSESIDNISYSKLNKGNFLNSRILEDKKSK EEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHH RKIRNNRK HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]