| Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
|---|---|
| Accession | NC_007681 |
| Length | 1,767,403 |
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The map label for this gene is 84489500
Identifier: 84489500
GI number: 84489500
Start: 802701
End: 804176
Strand: Direct
Name: 84489500
Synonym: Msp_0691
Alternate gene names: NA
Gene position: 802701-804176 (Clockwise)
Preceding gene: 84489499
Following gene: 84489505
Centisome position: 45.42
GC content: 28.18
Gene sequence:
>1476_bases ATGTCTCAAAAAAGTTCTTCTCCTAGATGGGAAAGTAATATAAGCTTTATACTTGCCATGATTGGGTCTGCTGTCGGATT AGGAAATATATGGCGTTATCCATATGTTGCATATACCAATGGTGGAGGAGCATTTATACTTCCATATATTATTTCAATAA TATGTCTTGGAATTCCATTACTATTTATTGAATATGGTACTGGATATAAATTCAAGTCGGGTATGAGTAAAATTCTTCGT AAAATTAATACAAAATATGAATATATAGGATGGTTTATTCAAACATCAACCTTTTTTATTTTAACATACTATGTATGTGT AGTAGCATGGAATCTATTGTATGTTCCATTAAGCTTTTTTAAAGGTTGGGGTTCAAATCCAGATAATTTTCTGAATACAG TAATACTAGAATCAACAACAGATGTAAGTGGATTGTTTCATATAGCAATATATGTTCTTATTGCACTTACAATTGTATGG ATTATATTATGGTATATTTCACATCATGATATAAATAAGGGAATAGGTAAATTTAATAAAATATTAACACCCTTATTATT TATTATAATGATAATTATAGTGGCATTTGCTCTTACATTACCAGGATCAGGTTTTGGTGTATTAACTCTCCTAACACCAG ATTTATCAGCAATTACTAATTCAGACATATGGATTGCAGCACTAAGTCAAATTTTATTTTCACTTAGTATAGGTATGTGT ATTGTTGTTGCATATACTGCATATCTTCCAGATGATGTTAATATTCCTAAAAATGTACTACTTGTAGCTTTAGCAAATAG TTCATTTGAAGTATTTACAGCAATAGGAATTTTTGGAATACTTGGTTTTATGAGTACAACACATGGAATTCCTATTAATG AACTTGTAACACAAGGAACTACATTAGCATTTGTAGCATTCCCTCAAATATTTAATGTAATGGGATTTATAGGTTATATT ATTGGGCCTTTATTCTTTATAGCATTATTATTTGCAGGTATAACATCAAATATTTCAATAATGGAACCTATTATCTTATC ACTTAGAGATAAATTTGGTTTTGAAAGAAAAAAAGCAGTGACAATATGTTGTGTTGTAGGATTTATAATATCATTACTAT TTACAACTTCCTTGGGAAGTAGTTTAGTAGGAGTATTTGACACATTCATAAATCAATTTGGTGTGGTGTTAAATGTAATT ATTGAACTTATATTAATTACATGGATTTATGGAATTGATAAAATTCTACCTGGAATAAATAAGAATGCAACCTTCCTAAA AATAGGACCTAAATGGAAAATATGGATGAAATACATTATTCCAATAATTATATTCATAATATGGATTAAAGGTATTTCTG AGTCATTAATAACAAATGATACATTTACAAACACAGTACAATTGTTGTTATTGGTGGCATTGTTTATTGTTCCATTGATA CTAACAAAAATTCCAGCAAAAGTTGAAGATTACTAA
Upstream 100 bases:
>100_bases TTTTTAATATAACGCTTTTTATTAAATTTATTGTATTAAATTAAATAATTTAGTAGATTAAAATTTAAGATATTTTAATT ATTATTAAAGAGGTGACTAC
Downstream 100 bases:
>100_bases AAAACTAACATTAATTGTTAGTTTTTCTTATTTTTTTTTTTAGATTAATTTCTTTTAGAATTATTATTAAAAAGAGCTAT TTTATTTTTTTTAGAAAAAG
Product: Na+-dependent transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MSQKSSSPRWESNISFILAMIGSAVGLGNIWRYPYVAYTNGGGAFILPYIISIICLGIPLLFIEYGTGYKFKSGMSKILR KINTKYEYIGWFIQTSTFFILTYYVCVVAWNLLYVPLSFFKGWGSNPDNFLNTVILESTTDVSGLFHIAIYVLIALTIVW IILWYISHHDINKGIGKFNKILTPLLFIIMIIIVAFALTLPGSGFGVLTLLTPDLSAITNSDIWIAALSQILFSLSIGMC IVVAYTAYLPDDVNIPKNVLLVALANSSFEVFTAIGIFGILGFMSTTHGIPINELVTQGTTLAFVAFPQIFNVMGFIGYI IGPLFFIALLFAGITSNISIMEPIILSLRDKFGFERKKAVTICCVVGFIISLLFTTSLGSSLVGVFDTFINQFGVVLNVI IELILITWIYGIDKILPGINKNATFLKIGPKWKIWMKYIIPIIIFIIWIKGISESLITNDTFTNTVQLLLLVALFIVPLI LTKIPAKVEDY
Sequences:
>Translated_491_residues MSQKSSSPRWESNISFILAMIGSAVGLGNIWRYPYVAYTNGGGAFILPYIISIICLGIPLLFIEYGTGYKFKSGMSKILR KINTKYEYIGWFIQTSTFFILTYYVCVVAWNLLYVPLSFFKGWGSNPDNFLNTVILESTTDVSGLFHIAIYVLIALTIVW IILWYISHHDINKGIGKFNKILTPLLFIIMIIIVAFALTLPGSGFGVLTLLTPDLSAITNSDIWIAALSQILFSLSIGMC IVVAYTAYLPDDVNIPKNVLLVALANSSFEVFTAIGIFGILGFMSTTHGIPINELVTQGTTLAFVAFPQIFNVMGFIGYI IGPLFFIALLFAGITSNISIMEPIILSLRDKFGFERKKAVTICCVVGFIISLLFTTSLGSSLVGVFDTFINQFGVVLNVI IELILITWIYGIDKILPGINKNATFLKIGPKWKIWMKYIIPIIIFIIWIKGISESLITNDTFTNTVQLLLLVALFIVPLI LTKIPAKVEDY >Mature_490_residues SQKSSSPRWESNISFILAMIGSAVGLGNIWRYPYVAYTNGGGAFILPYIISIICLGIPLLFIEYGTGYKFKSGMSKILRK INTKYEYIGWFIQTSTFFILTYYVCVVAWNLLYVPLSFFKGWGSNPDNFLNTVILESTTDVSGLFHIAIYVLIALTIVWI ILWYISHHDINKGIGKFNKILTPLLFIIMIIIVAFALTLPGSGFGVLTLLTPDLSAITNSDIWIAALSQILFSLSIGMCI VVAYTAYLPDDVNIPKNVLLVALANSSFEVFTAIGIFGILGFMSTTHGIPINELVTQGTTLAFVAFPQIFNVMGFIGYII GPLFFIALLFAGITSNISIMEPIILSLRDKFGFERKKAVTICCVVGFIISLLFTTSLGSSLVGVFDTFINQFGVVLNVII ELILITWIYGIDKILPGINKNATFLKIGPKWKIWMKYIIPIIIFIIWIKGISESLITNDTFTNTVQLLLLVALFIVPLIL TKIPAKVEDY
Specific function: Putative sodium-dependent transporter [H]
COG id: COG0733
COG function: function code R; Na+-dependent transporters of the SNF family
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]
Homologues:
Organism=Homo sapiens, GI7657587, Length=457, Percent_Identity=27.7899343544858, Blast_Score=191, Evalue=1e-48, Organism=Homo sapiens, GI289191351, Length=501, Percent_Identity=27.3453093812375, Blast_Score=182, Evalue=5e-46, Organism=Homo sapiens, GI4557046, Length=501, Percent_Identity=27.3453093812375, Blast_Score=182, Evalue=5e-46, Organism=Homo sapiens, GI289191377, Length=502, Percent_Identity=27.4900398406374, Blast_Score=182, Evalue=5e-46, Organism=Homo sapiens, GI21361581, Length=451, Percent_Identity=27.0509977827051, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI4507043, Length=492, Percent_Identity=28.0487804878049, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI171184408, Length=460, Percent_Identity=27.1739130434783, Blast_Score=172, Evalue=8e-43, Organism=Homo sapiens, GI171184406, Length=460, Percent_Identity=27.1739130434783, Blast_Score=172, Evalue=8e-43, Organism=Homo sapiens, GI171184404, Length=460, Percent_Identity=27.1739130434783, Blast_Score=172, Evalue=8e-43, Organism=Homo sapiens, GI188528618, Length=473, Percent_Identity=27.061310782241, Blast_Score=170, Evalue=4e-42, Organism=Homo sapiens, GI92859670, Length=512, Percent_Identity=25.78125, Blast_Score=169, Evalue=7e-42, Organism=Homo sapiens, GI5032097, Length=512, Percent_Identity=27.734375, Blast_Score=168, Evalue=1e-41, Organism=Homo sapiens, GI51468073, Length=529, Percent_Identity=23.6294896030246, Blast_Score=167, Evalue=3e-41, Organism=Homo sapiens, GI134304856, Length=454, Percent_Identity=27.9735682819383, Blast_Score=162, Evalue=5e-40, Organism=Homo sapiens, GI4507041, Length=485, Percent_Identity=25.5670103092783, Blast_Score=161, Evalue=1e-39, Organism=Homo sapiens, GI197276623, Length=483, Percent_Identity=27.9503105590062, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI54607094, Length=483, Percent_Identity=27.9503105590062, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI6005715, Length=520, Percent_Identity=27.1153846153846, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI194018524, Length=522, Percent_Identity=25.4789272030651, Blast_Score=155, Evalue=9e-38, Organism=Homo sapiens, GI218563756, Length=512, Percent_Identity=27.1484375, Blast_Score=152, Evalue=7e-37, Organism=Homo sapiens, GI11181770, Length=532, Percent_Identity=25, Blast_Score=149, Evalue=8e-36, Organism=Homo sapiens, GI67782317, Length=503, Percent_Identity=24.8508946322068, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI67782313, Length=503, Percent_Identity=24.8508946322068, Blast_Score=143, Evalue=3e-34, Organism=Homo sapiens, GI67782315, Length=503, Percent_Identity=24.8508946322068, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI33354281, Length=333, Percent_Identity=28.5285285285285, Blast_Score=138, Evalue=9e-33, Organism=Homo sapiens, GI12408638, Length=515, Percent_Identity=24.8543689320388, Blast_Score=136, Evalue=6e-32, Organism=Homo sapiens, GI58219014, Length=309, Percent_Identity=27.5080906148867, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI289191353, Length=329, Percent_Identity=27.0516717325228, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI218563758, Length=328, Percent_Identity=27.4390243902439, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI300360519, Length=300, Percent_Identity=24.6666666666667, Blast_Score=106, Evalue=4e-23, Organism=Homo sapiens, GI21361693, Length=126, Percent_Identity=37.3015873015873, Blast_Score=100, Evalue=5e-21, Organism=Homo sapiens, GI197276625, Length=113, Percent_Identity=38.0530973451327, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI226437581, Length=281, Percent_Identity=24.9110320284698, Blast_Score=77, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71995588, Length=505, Percent_Identity=27.3267326732673, Blast_Score=167, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17555248, Length=500, Percent_Identity=24.8, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17554804, Length=462, Percent_Identity=26.8398268398268, Blast_Score=154, Evalue=9e-38, Organism=Caenorhabditis elegans, GI25146584, Length=472, Percent_Identity=22.8813559322034, Blast_Score=149, Evalue=3e-36, Organism=Caenorhabditis elegans, GI71998244, Length=396, Percent_Identity=28.2828282828283, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI133952791, Length=294, Percent_Identity=28.2312925170068, Blast_Score=112, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17569475, Length=467, Percent_Identity=20.5567451820128, Blast_Score=102, Evalue=5e-22, Organism=Caenorhabditis elegans, GI212642127, Length=302, Percent_Identity=24.8344370860927, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17535731, Length=224, Percent_Identity=26.7857142857143, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17542050, Length=106, Percent_Identity=33.9622641509434, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI45550877, Length=477, Percent_Identity=28.5115303983228, Blast_Score=182, Evalue=5e-46, Organism=Drosophila melanogaster, GI24652942, Length=487, Percent_Identity=27.9260780287474, Blast_Score=179, Evalue=3e-45, Organism=Drosophila melanogaster, GI45551088, Length=487, Percent_Identity=27.9260780287474, Blast_Score=179, Evalue=3e-45, Organism=Drosophila melanogaster, GI221329674, Length=504, Percent_Identity=26.7857142857143, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI24639514, Length=504, Percent_Identity=26.7857142857143, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI19921936, Length=447, Percent_Identity=28.1879194630872, Blast_Score=175, Evalue=7e-44, Organism=Drosophila melanogaster, GI281363702, Length=477, Percent_Identity=26.2054507337526, Blast_Score=174, Evalue=2e-43, Organism=Drosophila melanogaster, GI24655079, Length=533, Percent_Identity=27.0168855534709, Blast_Score=171, Evalue=1e-42, Organism=Drosophila melanogaster, GI24639516, Length=524, Percent_Identity=25.763358778626, Blast_Score=169, Evalue=3e-42, Organism=Drosophila melanogaster, GI24762620, Length=488, Percent_Identity=27.6639344262295, Blast_Score=166, Evalue=3e-41, Organism=Drosophila melanogaster, GI45551183, Length=435, Percent_Identity=28.9655172413793, Blast_Score=164, Evalue=2e-40, Organism=Drosophila melanogaster, GI24661428, Length=481, Percent_Identity=25.1559251559252, Blast_Score=162, Evalue=5e-40, Organism=Drosophila melanogaster, GI281364136, Length=510, Percent_Identity=26.2745098039216, Blast_Score=162, Evalue=5e-40, Organism=Drosophila melanogaster, GI281365034, Length=485, Percent_Identity=27.2164948453608, Blast_Score=159, Evalue=3e-39, Organism=Drosophila melanogaster, GI19921352, Length=489, Percent_Identity=26.9938650306748, Blast_Score=158, Evalue=6e-39, Organism=Drosophila melanogaster, GI24584353, Length=489, Percent_Identity=26.9938650306748, Blast_Score=158, Evalue=6e-39, Organism=Drosophila melanogaster, GI24582567, Length=448, Percent_Identity=25.6696428571429, Blast_Score=158, Evalue=8e-39, Organism=Drosophila melanogaster, GI24639853, Length=503, Percent_Identity=26.0437375745527, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI17136952, Length=486, Percent_Identity=23.4567901234568, Blast_Score=142, Evalue=4e-34, Organism=Drosophila melanogaster, GI281364394, Length=489, Percent_Identity=23.9263803680982, Blast_Score=139, Evalue=6e-33, Organism=Drosophila melanogaster, GI28574704, Length=489, Percent_Identity=23.9263803680982, Blast_Score=139, Evalue=6e-33, Organism=Drosophila melanogaster, GI17136950, Length=489, Percent_Identity=23.9263803680982, Blast_Score=139, Evalue=6e-33, Organism=Drosophila melanogaster, GI28574702, Length=489, Percent_Identity=23.9263803680982, Blast_Score=139, Evalue=6e-33, Organism=Drosophila melanogaster, GI24654186, Length=340, Percent_Identity=28.2352941176471, Blast_Score=132, Evalue=7e-31, Organism=Drosophila melanogaster, GI281363700, Length=342, Percent_Identity=26.6081871345029, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI24582569, Length=405, Percent_Identity=24.1975308641975, Blast_Score=111, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000175 [H]
Pfam domain/function: PF00209 SNF [H]
EC number: NA
Molecular weight: Translated: 54529; Mature: 54398
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQKSSSPRWESNISFILAMIGSAVGLGNIWRYPYVAYTNGGGAFILPYIISIICLGIPL CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCCCHHHHHHHHHHHHHHH LFIEYGTGYKFKSGMSKILRKINTKYEYIGWFIQTSTFFILTYYVCVVAWNLLYVPLSFF HHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGWGSNPDNFLNTVILESTTDVSGLFHIAIYVLIALTIVWIILWYISHHDINKGIGKFNK CCCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILTPLLFIIMIIIVAFALTLPGSGFGVLTLLTPDLSAITNSDIWIAALSQILFSLSIGMC HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHH IVVAYTAYLPDDVNIPKNVLLVALANSSFEVFTAIGIFGILGFMSTTHGIPINELVTQGT HHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC TLAFVAFPQIFNVMGFIGYIIGPLFFIALLFAGITSNISIMEPIILSLRDKFGFERKKAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH TICCVVGFIISLLFTTSLGSSLVGVFDTFINQFGVVLNVIIELILITWIYGIDKILPGIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KNATFLKIGPKWKIWMKYIIPIIIFIIWIKGISESLITNDTFTNTVQLLLLVALFIVPLI CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LTKIPAKVEDY HHHCCCCCCCC >Mature Secondary Structure SQKSSSPRWESNISFILAMIGSAVGLGNIWRYPYVAYTNGGGAFILPYIISIICLGIPL CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCEEEEECCCCCCHHHHHHHHHHHHHHH LFIEYGTGYKFKSGMSKILRKINTKYEYIGWFIQTSTFFILTYYVCVVAWNLLYVPLSFF HHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KGWGSNPDNFLNTVILESTTDVSGLFHIAIYVLIALTIVWIILWYISHHDINKGIGKFNK CCCCCCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILTPLLFIIMIIIVAFALTLPGSGFGVLTLLTPDLSAITNSDIWIAALSQILFSLSIGMC HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHH IVVAYTAYLPDDVNIPKNVLLVALANSSFEVFTAIGIFGILGFMSTTHGIPINELVTQGT HHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC TLAFVAFPQIFNVMGFIGYIIGPLFFIALLFAGITSNISIMEPIILSLRDKFGFERKKAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH TICCVVGFIISLLFTTSLGSSLVGVFDTFINQFGVVLNVIIELILITWIYGIDKILPGIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KNATFLKIGPKWKIWMKYIIPIIIFIIWIKGISESLITNDTFTNTVQLLLLVALFIVPLI CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LTKIPAKVEDY HHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]