Click here to switch to the map view.

The map label for this gene is hdrC2

Identifier: 84488954

GI number: 84488954

Start: 139957

End: 140541

Strand: Direct

Name: hdrC2

Synonym: Msp_0125

Alternate gene names: 84488954

Gene position: 139957-140541 (Clockwise)

Preceding gene: 84488953

Following gene: 84488955

Centisome position: 7.92

GC content: 31.97

Gene sequence:

>585_bases
ATGGGTCAATCAAAAAAGGATGATTTGGCCTATAAAGTATTAAAGGATATAAAGGCATCCCCTGATTTAGGACTACTTAG
ATGTGTACAATGTGGAATGTGTGCATCATCATGTCCAGCAGCAAGACACTCAGAATATGATCCAAGAGTAGTAATAAAAC
GAGTTCTTGATGATGATAAAACATTACTTGAAGACAAATATATATGGAACTGTTTCTACTGCTACAACTGTCATAGTGTA
TGTCCAGTAGGAAACAGTGTATGTGAAGTAAATCAAATACTAAGACAAATGGCAATAGATAAAGACACAGGAAAAAAAGA
AATAGAATCATTTATGAGCTTTGCAGACAGTTTCCTTGATACAGGATTAGGAGTAATACCAAAAGAATATCATAAACAAT
TATTTAAGGATTATGGACCACATTGGGATAGATTACAACAACAACTTGAAGATGTACGTAAAACACTAAATTTAGAAAGT
ATGTTTTTACTTCCAGAAGCAGAAAAAGAAGTAGATAAAACATTAGAAGCAATAGGATTTAAAAACAGAGTTAAGAAAAT
AAAAGATGTAAGGGACAAGAAATAG

Upstream 100 bases:

>100_bases
AAAAATTTTAAGTATTATAAACATATATCAAGTATAAAGAAGTATAAAAAAATAGTAATTTAATAATAGGTGAATTTCAT
TGAATGTTAAAAGGAGAGAA

Downstream 100 bases:

>100_bases
TGGGGGAAGAAAGTATGGAACAAACAAATACAAAAAACATACCAATAAAGGACATAACACTATTTAGAAGCTGTCTTGTA
TCTGCAGAATATCCTGGAAT

Product: HdrC2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MGQSKKDDLAYKVLKDIKASPDLGLLRCVQCGMCASSCPAARHSEYDPRVVIKRVLDDDKTLLEDKYIWNCFYCYNCHSV
CPVGNSVCEVNQILRQMAIDKDTGKKEIESFMSFADSFLDTGLGVIPKEYHKQLFKDYGPHWDRLQQQLEDVRKTLNLES
MFLLPEAEKEVDKTLEAIGFKNRVKKIKDVRDKK

Sequences:

>Translated_194_residues
MGQSKKDDLAYKVLKDIKASPDLGLLRCVQCGMCASSCPAARHSEYDPRVVIKRVLDDDKTLLEDKYIWNCFYCYNCHSV
CPVGNSVCEVNQILRQMAIDKDTGKKEIESFMSFADSFLDTGLGVIPKEYHKQLFKDYGPHWDRLQQQLEDVRKTLNLES
MFLLPEAEKEVDKTLEAIGFKNRVKKIKDVRDKK
>Mature_193_residues
GQSKKDDLAYKVLKDIKASPDLGLLRCVQCGMCASSCPAARHSEYDPRVVIKRVLDDDKTLLEDKYIWNCFYCYNCHSVC
PVGNSVCEVNQILRQMAIDKDTGKKEIESFMSFADSFLDTGLGVIPKEYHKQLFKDYGPHWDRLQQQLEDVRKTLNLESM
FLLPEAEKEVDKTLEAIGFKNRVKKIKDVRDKK

Specific function: Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B) [H]

COG id: COG1150

COG function: function code C; Heterodisulfide reductase, subunit C

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017680
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: NA

EC number: =1.8.98.1 [H]

Molecular weight: Translated: 22348; Mature: 22217

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQSKKDDLAYKVLKDIKASPDLGLLRCVQCGMCASSCPAARHSEYDPRVVIKRVLDDDK
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHCCHH
TLLEDKYIWNCFYCYNCHSVCPVGNSVCEVNQILRQMAIDKDTGKKEIESFMSFADSFLD
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGLGVIPKEYHKQLFKDYGPHWDRLQQQLEDVRKTLNLESMFLLPEAEKEVDKTLEAIGF
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHEECCCHHHHHHHHHHHHHH
KNRVKKIKDVRDKK
HHHHHHHHHHHCCC
>Mature Secondary Structure 
GQSKKDDLAYKVLKDIKASPDLGLLRCVQCGMCASSCPAARHSEYDPRVVIKRVLDDDK
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHCCHH
TLLEDKYIWNCFYCYNCHSVCPVGNSVCEVNQILRQMAIDKDTGKKEIESFMSFADSFLD
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGLGVIPKEYHKQLFKDYGPHWDRLQQQLEDVRKTLNLESMFLLPEAEKEVDKTLEAIGF
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHEECCCHHHHHHHHHHHHHH
KNRVKKIKDVRDKK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]