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The map label for this gene is exoD [H]

Identifier: 84488903

GI number: 84488903

Start: 87529

End: 88194

Strand: Direct

Name: exoD [H]

Synonym: Msp_0073

Alternate gene names: 84488903

Gene position: 87529-88194 (Clockwise)

Preceding gene: 84488902

Following gene: 84488906

Centisome position: 4.95

GC content: 28.08

Gene sequence:

>666_bases
GTGGATAAAAATATTGAAAACACACTCATACTTAAAGATGAACATATTAAGTATATAAAAACATCAGATAGACTTAGAAT
AATTAGAAAGAATATTCCCCAAGGAAATATCACTATAAAAACATTGGTTGATACTCTCATAAATGAAGGAGTCTATCTCT
TAATAATAATATTAGTAGCTCCATTCTTATTTCCAGTATCTATTCCAGGGAGTAGTACACCATTTGGCGTGTTAATAATA
TTACTTAATTTTTCAATACTCTCTAATGGACATTTACATCTACCAAAATTCATATCAAAGCAAGTATTAACTACAGAAAC
TATTGATAAATTCTTTGATATATTACATAAGGCATTAAGTTATGTGGAATTAATATCAAAGCCAAGGGGTAAACTAGTAA
CAAACAAGCATATTCTTAAAATTAATGCAGTAATAACGATTATTTTAGCATTTTTATTGTTTCTACCACTACCTATTCCA
TTTACAGATTTCATACCGAGTGTAGCAATACTGTTGTTGGCAGTAAGTAGTTTAGAAAATGATTCCTATCTAATGATAAT
AGGATATGTTGCAACTGTTATTACATTAGCTTACTTCTATTCAGTAGGTTATATTGGGGTTGAAATAATTCGTGCTGTGC
TAAATACTATTTTAGCATATATTTAA

Upstream 100 bases:

>100_bases
CTTAATATAAGTTCTCTTCTTTATTTTTCTTTATAAATAAAATACTATTTTTTTTATATAACTTAGGAGATTATATATTT
AATATTCAAGAGGTGAAGTT

Downstream 100 bases:

>100_bases
AAAAAATAGAGGATGTTTATAGAAAAAAATTAATTTTTTCTTTTACCTTTTGGTCTAGGAATTACTTTATGTTCATTATT
AGATGTGGTTCTATTGATTT

Product: exopolysaccharide synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDKNIENTLILKDEHIKYIKTSDRLRIIRKNIPQGNITIKTLVDTLINEGVYLLIIILVAPFLFPVSIPGSSTPFGVLII
LLNFSILSNGHLHLPKFISKQVLTTETIDKFFDILHKALSYVELISKPRGKLVTNKHILKINAVITIILAFLLFLPLPIP
FTDFIPSVAILLLAVSSLENDSYLMIIGYVATVITLAYFYSVGYIGVEIIRAVLNTILAYI

Sequences:

>Translated_221_residues
MDKNIENTLILKDEHIKYIKTSDRLRIIRKNIPQGNITIKTLVDTLINEGVYLLIIILVAPFLFPVSIPGSSTPFGVLII
LLNFSILSNGHLHLPKFISKQVLTTETIDKFFDILHKALSYVELISKPRGKLVTNKHILKINAVITIILAFLLFLPLPIP
FTDFIPSVAILLLAVSSLENDSYLMIIGYVATVITLAYFYSVGYIGVEIIRAVLNTILAYI
>Mature_221_residues
MDKNIENTLILKDEHIKYIKTSDRLRIIRKNIPQGNITIKTLVDTLINEGVYLLIIILVAPFLFPVSIPGSSTPFGVLII
LLNFSILSNGHLHLPKFISKQVLTTETIDKFFDILHKALSYVELISKPRGKLVTNKHILKINAVITIILAFLLFLPLPIP
FTDFIPSVAILLLAVSSLENDSYLMIIGYVATVITLAYFYSVGYIGVEIIRAVLNTILAYI

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 24761; Mature: 24761

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKNIENTLILKDEHIKYIKTSDRLRIIRKNIPQGNITIKTLVDTLINEGVYLLIIILVA
CCCCCCCEEEEECCCHHHEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
PFLFPVSIPGSSTPFGVLIILLNFSILSNGHLHLPKFISKQVLTTETIDKFFDILHKALS
HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
YVELISKPRGKLVTNKHILKINAVITIILAFLLFLPLPIPFTDFIPSVAILLLAVSSLEN
HHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
DSYLMIIGYVATVITLAYFYSVGYIGVEIIRAVLNTILAYI
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDKNIENTLILKDEHIKYIKTSDRLRIIRKNIPQGNITIKTLVDTLINEGVYLLIIILVA
CCCCCCCEEEEECCCHHHEECCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
PFLFPVSIPGSSTPFGVLIILLNFSILSNGHLHLPKFISKQVLTTETIDKFFDILHKALS
HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
YVELISKPRGKLVTNKHILKINAVITIILAFLLFLPLPIPFTDFIPSVAILLLAVSSLEN
HHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
DSYLMIIGYVATVITLAYFYSVGYIGVEIIRAVLNTILAYI
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]