| Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
|---|---|
| Accession | NC_007681 |
| Length | 1,767,403 |
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The map label for this gene is yfcK [C]
Identifier: 84488906
GI number: 84488906
Start: 90827
End: 92029
Strand: Direct
Name: yfcK [C]
Synonym: Msp_0076
Alternate gene names: 84488906
Gene position: 90827-92029 (Clockwise)
Preceding gene: 84488903
Following gene: 84488908
Centisome position: 5.14
GC content: 29.93
Gene sequence:
>1203_bases ATGGACGATAATCAAGAGGATTCACGACTTGAAATGTCACAACAAAATAAACAAATAATACAACAAGTCTTTGAATTAGA ATTAGATGGTCATAAAGATGCAAGAGAGTTATATAAAGAAGAAATAGCAGGATTTTTAATTAAAACAGATGATGGATCCT ATACTTTATCATCAGAAAAACGTTCTGATGGTATAGAGACATTACATAGTACTTTTGGTGCACGTACAGAGGCATTTGAA AAATTTGCAATTCCATCTAAACTTAAAGAAAAAGCAGAATCAAGAAAAATTATACGGGTTTTAGATATATGTAGTGGTAT TGGATATAATGTATCAGCATTACTTGACTATTTAAATGATAGTGATGTTGTAATAGAAGTTGATATGGTTGAATCCTCTT TAGAAACATTGGCAACTACCCTTTTTATTCCAGATATATGTAAATCCCATGGTTTTGTTAAGAAAACAATAGAACTTTAC TTAATAGAAAATGGTTATCTACAGTATAATAAAGTTCTAAGTGACATTCCCTCAAATATTAAATTAAATATTCATGTCTG TGATGCACGTGATTTTTTAAAAGAAAATGCAAATAAAGAGTATGATGCAGTATTTTTAGATCCATTTAGTCCAGCTAAAT GTCCGGAATTATATACTGTTGATTTTTTCAATAAATTAAAAGAATTCTTAACAACAACTTCTCTTATATTAACATATACA GCTGCAAGTGCAGTTAGAAGTGCTATGATTAAGGTAGGTTTACATGTTGGTGAAGGTCCACAGTTTCATAGAAGTGGTGG AACAATAGCTTCAAAATGTTTTGACTTGTTAGATAAACCCTTAGCATTTGGTGATGAGAAGGTTATAGCTTTAAGTGATG TTGGAGTTCCATATATGGATCCTGATTTATCTGATGATTATAACACAATAATTGCAAGAAGACAATCTATACGTAGTAAG ATTAGAGGAGTATCTGTATTTCCATCTTCAAGTAAACTTCCACGTTATCTTGGAATTGATCCTATGGAGATTGAAGATGA AACATTACGTGATAAATTAAATGGTTATGTTCAAAATATGGGATTTGAAGCATTAAATGATCCAAGAATTTTAAGTATGT TGGATATAGATAGAAATGCACCTAGTAAGAATCAGGTTCTTGAATTAGAGCAGAATATGGAATATATATTAAATTCAATA TAG
Upstream 100 bases:
>100_bases AATGTTTTTTAATTTTATTTTTTTTTTCTATAGATAATTAAATTGGATCAAATTTAAAAATAAGGTAACAAAAATTAACT TAAAATATTAAGGTGAAGTT
Downstream 100 bases:
>100_bases TTAGGTAATATTATACTACCTAACAATAATTATTATATTGACTATACTTGTTTCTATTTTTATTAGATCTTTCTATGTTA ATAGCACTAACTTCTCCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MDDNQEDSRLEMSQQNKQIIQQVFELELDGHKDARELYKEEIAGFLIKTDDGSYTLSSEKRSDGIETLHSTFGARTEAFE KFAIPSKLKEKAESRKIIRVLDICSGIGYNVSALLDYLNDSDVVIEVDMVESSLETLATTLFIPDICKSHGFVKKTIELY LIENGYLQYNKVLSDIPSNIKLNIHVCDARDFLKENANKEYDAVFLDPFSPAKCPELYTVDFFNKLKEFLTTTSLILTYT AASAVRSAMIKVGLHVGEGPQFHRSGGTIASKCFDLLDKPLAFGDEKVIALSDVGVPYMDPDLSDDYNTIIARRQSIRSK IRGVSVFPSSSKLPRYLGIDPMEIEDETLRDKLNGYVQNMGFEALNDPRILSMLDIDRNAPSKNQVLELEQNMEYILNSI
Sequences:
>Translated_400_residues MDDNQEDSRLEMSQQNKQIIQQVFELELDGHKDARELYKEEIAGFLIKTDDGSYTLSSEKRSDGIETLHSTFGARTEAFE KFAIPSKLKEKAESRKIIRVLDICSGIGYNVSALLDYLNDSDVVIEVDMVESSLETLATTLFIPDICKSHGFVKKTIELY LIENGYLQYNKVLSDIPSNIKLNIHVCDARDFLKENANKEYDAVFLDPFSPAKCPELYTVDFFNKLKEFLTTTSLILTYT AASAVRSAMIKVGLHVGEGPQFHRSGGTIASKCFDLLDKPLAFGDEKVIALSDVGVPYMDPDLSDDYNTIIARRQSIRSK IRGVSVFPSSSKLPRYLGIDPMEIEDETLRDKLNGYVQNMGFEALNDPRILSMLDIDRNAPSKNQVLELEQNMEYILNSI >Mature_400_residues MDDNQEDSRLEMSQQNKQIIQQVFELELDGHKDARELYKEEIAGFLIKTDDGSYTLSSEKRSDGIETLHSTFGARTEAFE KFAIPSKLKEKAESRKIIRVLDICSGIGYNVSALLDYLNDSDVVIEVDMVESSLETLATTLFIPDICKSHGFVKKTIELY LIENGYLQYNKVLSDIPSNIKLNIHVCDARDFLKENANKEYDAVFLDPFSPAKCPELYTVDFFNKLKEFLTTTSLILTYT AASAVRSAMIKVGLHVGEGPQFHRSGGTIASKCFDLLDKPLAFGDEKVIALSDVGVPYMDPDLSDDYNTIIARRQSIRSK IRGVSVFPSSSKLPRYLGIDPMEIEDETLRDKLNGYVQNMGFEALNDPRILSMLDIDRNAPSKNQVLELEQNMEYILNSI
Specific function: Unknown
COG id: COG4121
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008471 [H]
Pfam domain/function: PF05430 DUF752 [H]
EC number: NA
Molecular weight: Translated: 45110; Mature: 45110
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDNQEDSRLEMSQQNKQIIQQVFELELDGHKDARELYKEEIAGFLIKTDDGSYTLSSEK CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCEEECCCH RSDGIETLHSTFGARTEAFEKFAIPSKLKEKAESRKIIRVLDICSGIGYNVSALLDYLND HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC SDVVIEVDMVESSLETLATTLFIPDICKSHGFVKKTIELYLIENGYLQYNKVLSDIPSNI CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCE KLNIHVCDARDFLKENANKEYDAVFLDPFSPAKCPELYTVDFFNKLKEFLTTTSLILTYT EEEEEEECHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH AASAVRSAMIKVGLHVGEGPQFHRSGGTIASKCFDLLDKPLAFGDEKVIALSDVGVPYMD HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCHHCCCCCCEEEEECCCCCCCC PDLSDDYNTIIARRQSIRSKIRGVSVFPSSSKLPRYLGIDPMEIEDETLRDKLNGYVQNM CCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHC GFEALNDPRILSMLDIDRNAPSKNQVLELEQNMEYILNSI CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDDNQEDSRLEMSQQNKQIIQQVFELELDGHKDARELYKEEIAGFLIKTDDGSYTLSSEK CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCCCEEECCCH RSDGIETLHSTFGARTEAFEKFAIPSKLKEKAESRKIIRVLDICSGIGYNVSALLDYLND HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC SDVVIEVDMVESSLETLATTLFIPDICKSHGFVKKTIELYLIENGYLQYNKVLSDIPSNI CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCE KLNIHVCDARDFLKENANKEYDAVFLDPFSPAKCPELYTVDFFNKLKEFLTTTSLILTYT EEEEEEECHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH AASAVRSAMIKVGLHVGEGPQFHRSGGTIASKCFDLLDKPLAFGDEKVIALSDVGVPYMD HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCHHCCCCCCEEEEECCCCCCCC PDLSDDYNTIIARRQSIRSKIRGVSVFPSSSKLPRYLGIDPMEIEDETLRDKLNGYVQNM CCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHC GFEALNDPRILSMLDIDRNAPSKNQVLELEQNMEYILNSI CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]