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The map label for this gene is rpoE [H]

Identifier: 83721231

GI number: 83721231

Start: 2452323

End: 2453045

Strand: Direct

Name: rpoE [H]

Synonym: BTH_I2177

Alternate gene names: 83721231

Gene position: 2452323-2453045 (Clockwise)

Preceding gene: 83720817

Following gene: 83721602

Centisome position: 64.38

GC content: 73.31

Gene sequence:

>723_bases
GTGGGTCAATTCGGCCGAGTGGTCGACGAACGCAACGCGGGCGACGAGGGCGGCGAGGATGAGCAGGACGGCGAGGCCGC
GGCGGCGCGCGGCGAGCGCTTTCGCACGCTCGCGCTGCCGCATCTGGACGCCGCGTACAACCTCGCGCGCTGGCTGTGCG
GCAATGCGAGCGACGCGGAGGACGTCGTGCAGGACGCGTGCATGCGCGCGTTTCGCTTTCTGGATTCGTGCCGCGGCGAC
AACGCGCGGCCGTGGCTGCTGACGATCGTGCGCCACACCTGGTACACCGAGTGGCGGCGGCGGGCGAATGCACACGAAGT
CGCCGCGACCGACGCGCTCGACGCCGCCGATTCGCCGGACGACTGGCAGCCGGCGGCCGAAGATCCGCTCGCGCTGCTGA
TGCGCAGCGAAGACGCGCACCGCGTGAACGCCGCGCTCGCGAAGCTGCCGCCCGAGTACCGCGAGGTGCTCGTGCTGCGC
GAAATGGAGGACTTGAGCTACCGTGAGATCGCGGCGATCGCCGACGTGCCTGTCGGCACCGTGATGTCGCGGCTCGCGAG
GGCGCGGCGGCGGCTCGCCGCGTTGCTCGGCGGCGCGCACGACGAGACGGCGCACGCATCGCGCGCCGCCCGCGCGCCGG
CGCGTTCGGGCGAGCGCGCGGCGGACGGCGAGCGGGGCACGCCGCCGTCCGGAACCGCATCGGAGGCCATCGATGGACTG
TAA

Upstream 100 bases:

>100_bases
AGCGATGAGCGGTAAGCATCGTTGACGGCGTGCGCCGCATCGGGCGGCGTGCGCCGGAGGCGAGCGGCCGGCGGGCGGCC
GCGCATCCCCGGGAGGCGAC

Downstream 100 bases:

>100_bases
CGAAGCGCGTGCGCTGCTCGGCGCGGACGTCGACCGCGAGCTTTCCGCGCCCGACGCGTGGCGGATCGAGCGGCACGTCG
ACAGTTGCAGTGCGTGCCGT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MGQFGRVVDERNAGDEGGEDEQDGEAAAARGERFRTLALPHLDAAYNLARWLCGNASDAEDVVQDACMRAFRFLDSCRGD
NARPWLLTIVRHTWYTEWRRRANAHEVAATDALDAADSPDDWQPAAEDPLALLMRSEDAHRVNAALAKLPPEYREVLVLR
EMEDLSYREIAAIADVPVGTVMSRLARARRRLAALLGGAHDETAHASRAARAPARSGERAADGERGTPPSGTASEAIDGL

Sequences:

>Translated_240_residues
MGQFGRVVDERNAGDEGGEDEQDGEAAAARGERFRTLALPHLDAAYNLARWLCGNASDAEDVVQDACMRAFRFLDSCRGD
NARPWLLTIVRHTWYTEWRRRANAHEVAATDALDAADSPDDWQPAAEDPLALLMRSEDAHRVNAALAKLPPEYREVLVLR
EMEDLSYREIAAIADVPVGTVMSRLARARRRLAALLGGAHDETAHASRAARAPARSGERAADGERGTPPSGTASEAIDGL
>Mature_239_residues
GQFGRVVDERNAGDEGGEDEQDGEAAAARGERFRTLALPHLDAAYNLARWLCGNASDAEDVVQDACMRAFRFLDSCRGDN
ARPWLLTIVRHTWYTEWRRRANAHEVAATDALDAADSPDDWQPAAEDPLALLMRSEDAHRVNAALAKLPPEYREVLVLRE
MEDLSYREIAAIADVPVGTVMSRLARARRRLAALLGGAHDETAHASRAARAPARSGERAADGERGTPPSGTASEAIDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=138, Percent_Identity=39.1304347826087, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 26168; Mature: 26037

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQFGRVVDERNAGDEGGEDEQDGEAAAARGERFRTLALPHLDAAYNLARWLCGNASDAE
CCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
DVVQDACMRAFRFLDSCRGDNARPWLLTIVRHTWYTEWRRRANAHEVAATDALDAADSPD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
DWQPAAEDPLALLMRSEDAHRVNAALAKLPPEYREVLVLREMEDLSYREIAAIADVPVGT
CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHH
VMSRLARARRRLAALLGGAHDETAHASRAARAPARSGERAADGERGTPPSGTASEAIDGL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
GQFGRVVDERNAGDEGGEDEQDGEAAAARGERFRTLALPHLDAAYNLARWLCGNASDAE
CCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
DVVQDACMRAFRFLDSCRGDNARPWLLTIVRHTWYTEWRRRANAHEVAATDALDAADSPD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
DWQPAAEDPLALLMRSEDAHRVNAALAKLPPEYREVLVLREMEDLSYREIAAIADVPVGT
CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHH
VMSRLARARRRLAALLGGAHDETAHASRAARAPARSGERAADGERGTPPSGTASEAIDGL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]