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The map label for this gene is yafC [H]

Identifier: 83721094

GI number: 83721094

Start: 429423

End: 430337

Strand: Direct

Name: yafC [H]

Synonym: BTH_I0388

Alternate gene names: 83721094

Gene position: 429423-430337 (Clockwise)

Preceding gene: 83720495

Following gene: 83720060

Centisome position: 11.27

GC content: 70.82

Gene sequence:

>915_bases
ATGGATCGACTCACCAGCATGGCTGTGTTCGTGAAGGCCGCGGAAACGGGCTCGTTCGCGGCGGCGGGCGCATCGCTCGG
CCTGTCGTCGCAGATGGTCGGCAAGCACGTGCGCTTTCTCGAGACCCACTACGGGATGCGGCTCATCAATCGCACGACGC
GCCGCCAGAGCCTGACCGAAGCCGGCCGCGCGTTCTACGAGCGCAGCCGGGCGGTACTGGCCGAGGCGCAGGCCGTCGAC
GCGCTCGCCGCGAACCTGATGGCCGCGCCGCGCGGCACGCTGCGCATCAACGCTCCGATCAGCTTCGGCGTGCATTGCCT
GATGCCGATGCTCGCGTCGTACATGCGCGCGTATCCGGAGGTGCAGATTGATCTGACGTTGAGCGATCGCATCGTCGATG
TCGTCGACGAAGGCTACGACGCGGTGATCCGCATCGCGCCGCTCGCCGATTCCGGGCTGATCGCGCGGCCGCTCGCGCCG
TACCGGCTCGTGCTGTGCGCGTCGCCCGCGTATCTCGCCGAGCACGGCGCGCCGGCCGAGCCCGCCGATCTGGCCGCGCA
CGAATGCCTCGGGTTTTCGTATTCGGGGCAGCCGGCGGCGCTCGAATGGCCGTTCGAGAGCGCGCAGGGGCAGCAGCATT
CGGTGCGCGTGAGGAGCCGGCTCGCGGTCAACAACGGTGCGGCGCTGCGGATGGCCGCGCTCGACGGGCTCGGCATCATC
CTGCAGCCGGCCGAGCTCGTGCGCGACGATCTCGCGGCGGGCCGGCTCGTGCGCCTGCTGCCCGGCCATGAGCCGCCCGC
GCGGCCGATCCATGTGCTGTATTCGCCCGATCGGCAGCCGACGCCGAAGCTGCGCAGCTTCATCGACGCCGTGATCGCGG
CGTTCGGCGAGCGGGCGGGCGACGGGCGGACGTGA

Upstream 100 bases:

>100_bases
GGATCTCCATGAGAAAAATCGGTGAGCCCACTATAATTCGCGCCGATTCGACGATAAATTGCCAAGTCGAATCATTTATT
GAAACGAATGATTTCGAATC

Downstream 100 bases:

>100_bases
GCCCGCGCGTGAGGTCCGGCGGACCGGACGAACGGGCCGGCGGGGTGCGCGAGCGCCCGCCCGCATCGCGAGGCGCGACC
CGCCCCGCCCGACGAAACGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDRLTSMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFYERSRAVLAEAQAVD
ALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLTLSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAP
YRLVLCASPAYLAEHGAPAEPADLAAHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGII
LQPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFGERAGDGRT

Sequences:

>Translated_304_residues
MDRLTSMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFYERSRAVLAEAQAVD
ALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLTLSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAP
YRLVLCASPAYLAEHGAPAEPADLAAHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGII
LQPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFGERAGDGRT
>Mature_304_residues
MDRLTSMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTEAGRAFYERSRAVLAEAQAVD
ALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPEVQIDLTLSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAP
YRLVLCASPAYLAEHGAPAEPADLAAHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGII
LQPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFGERAGDGRT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=36.7132867132867, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=32.996632996633, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=35.0515463917526, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=34.2372881355932, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=32.6599326599327, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1789440, Length=294, Percent_Identity=31.2925170068027, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=27.3356401384083, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=26.953125, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=25.2595155709343, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790011, Length=255, Percent_Identity=24.7058823529412, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786448, Length=260, Percent_Identity=27.3076923076923, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=177, Percent_Identity=30.5084745762712, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=24.8344370860927, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32689; Mature: 32689

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLTSMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTE
CCCHHHEEHEEEECCCCCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRAFYERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VQIDLTLSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAPYRLVLCASPAYLAEHGAPAE
EEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCCEECCCCCEEEEEECCCHHHHHCCCCCC
PADLAAHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGII
HHHHHHHHHCCCCCCCCCCEEECCCHHCCCCHHHHHHHHHHEECCCCEEEEEECCCCCEE
LQPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFGERAG
ECCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
DGRT
CCCC
>Mature Secondary Structure
MDRLTSMAVFVKAAETGSFAAAGASLGLSSQMVGKHVRFLETHYGMRLINRTTRRQSLTE
CCCHHHEEHEEEECCCCCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRAFYERSRAVLAEAQAVDALAANLMAAPRGTLRINAPISFGVHCLMPMLASYMRAYPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
VQIDLTLSDRIVDVVDEGYDAVIRIAPLADSGLIARPLAPYRLVLCASPAYLAEHGAPAE
EEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCCEECCCCCEEEEEECCCHHHHHCCCCCC
PADLAAHECLGFSYSGQPAALEWPFESAQGQQHSVRVRSRLAVNNGAALRMAALDGLGII
HHHHHHHHHCCCCCCCCCCEEECCCHHCCCCHHHHHHHHHHEECCCCEEEEEECCCCCEE
LQPAELVRDDLAAGRLVRLLPGHEPPARPIHVLYSPDRQPTPKLRSFIDAVIAAFGERAG
ECCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
DGRT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]