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The map label for this gene is ydcN [H]

Identifier: 83720918

GI number: 83720918

Start: 678575

End: 679234

Strand: Direct

Name: ydcN [H]

Synonym: BTH_I0594

Alternate gene names: 83720918

Gene position: 678575-679234 (Clockwise)

Preceding gene: 83721494

Following gene: 83718467

Centisome position: 17.81

GC content: 69.85

Gene sequence:

>660_bases
ATGCATTCACCGTTGGCGCTCGTGCGCGATGTGTCTTCACAGGATGCCGCTGCGGCGGCCGACGCCGATATGTCGCTCGA
TGCGCTCGAGCGGCTCGTCGGCGTGAATCTCGCGCGGCTGCGCGCGGAACGCCAGCTGTCGCTCGATGCGCTCGCGCGGC
TCTCCGGCGTGTCGCGCGCGATGCTCGCGCAGATCGAATCGGCGCGCAGCGTGCCGTCGATCAAGGTGCTTTGCAAGGTC
GCGGCCGCGCTGAAGGTGTCGGTTGCCGCGTTCCTGCGCCGTCACGCGGTCAACGGCTTCGAGCACTTGAGCGCCGAGCG
CGCGGTGCGCGTCGTCAGCTCGAACGGACGCTTTTCCGCGCGCGCGCTGTATCCGGAAGGCGAGCCCGCGGTCGCCGAGT
TCCACGAGTTGCGGATCGCGCCGCTGCACACCGAGCCGGGCGCGCCGCGCGCGCCCGGCACGAGCGTGAATCTCGTCGTC
AGCGAAGGCACGCTCGAAGTCAGCATCCACGATCGCCGCCAGTTGCTCGCGACGGGCGATGCGATCGTGTTCGACGCCGA
TCAGCCGTACACGCTGCGCAATCCGGGCGATACCGAGGCGCGCGCGTTTCGCGTGACGGTGAACGCCGAAGTGCCGCCGC
GCTGGCACGTGCCGGCTTGA

Upstream 100 bases:

>100_bases
TAACAGTGTGAAGATAACTTTGTTTGATGGCACCGTGGCGGATGTTAGTCTTTGTCTCATCTGAAACCGCTGGGCTCGCT
CGGGCCCTGGAGGCAACGTC

Downstream 100 bases:

>100_bases
CGCCGCATTTCGCCGCGCACCCCGCGCGGTTTAGACGGATTCGTCAGTAGGGTCTTGTCGCGTTCCCGCTGCGGCGATTG
ATCGGCTGTTGTATGCTTCA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MHSPLALVRDVSSQDAAAAADADMSLDALERLVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKV
AAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPGAPRAPGTSVNLVV
SEGTLEVSIHDRRQLLATGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA

Sequences:

>Translated_219_residues
MHSPLALVRDVSSQDAAAAADADMSLDALERLVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKV
AAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPGAPRAPGTSVNLVV
SEGTLEVSIHDRRQLLATGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA
>Mature_219_residues
MHSPLALVRDVSSQDAAAAADADMSLDALERLVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKV
AAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSARALYPEGEPAVAEFHELRIAPLHTEPGAPRAPGTSVNLVV
SEGTLEVSIHDRRQLLATGDAIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=27.906976744186, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 23489; Mature: 23489

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSPLALVRDVSSQDAAAAADADMSLDALERLVGVNLARLRAERQLSLDALARLSGVSRA
CCCCHHHHHCCCCCCHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
MLAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCCEEE
RALYPEGEPAVAEFHELRIAPLHTEPGAPRAPGTSVNLVVSEGTLEVSIHDRRQLLATGD
EEECCCCCCHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCEEEEEECCCHHHEECCC
AIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA
EEEEECCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MHSPLALVRDVSSQDAAAAADADMSLDALERLVGVNLARLRAERQLSLDALARLSGVSRA
CCCCHHHHHCCCCCCHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
MLAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHAVNGFEHLSAERAVRVVSSNGRFSA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCCEEE
RALYPEGEPAVAEFHELRIAPLHTEPGAPRAPGTSVNLVVSEGTLEVSIHDRRQLLATGD
EEECCCCCCHHHHHHHEEEEEEECCCCCCCCCCCEEEEEEECCEEEEEECCCHHHEECCC
AIVFDADQPYTLRNPGDTEARAFRVTVNAEVPPRWHVPA
EEEEECCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]