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The map label for this gene is intF [H]

Identifier: 83720868

GI number: 83720868

Start: 3112643

End: 3114082

Strand: Direct

Name: intF [H]

Synonym: BTH_I2717

Alternate gene names: 83720868

Gene position: 3112643-3114082 (Clockwise)

Preceding gene: 83720472

Following gene: 83721145

Centisome position: 81.71

GC content: 57.5

Gene sequence:

>1440_bases
GTGACAAAGGAAAATTTCACGATCGAACGGGTCACCGGTTACGAGTGCACGCCAGGGCGACAACAGACGATCTATTGGGA
CAAGAAGCAGCAAGGACTCGGCCTTCGCGTGACGGCATCGGGCGTGAAGTCCTACGTATTCGAGGGCCGTTTGTTTGGCA
AGACCGTTCGGATCACCATCGGCTCGCCCAACGCATGGCCGCTGGAGCGACACGCCACGACCGACGCGGCGACCGGGAAG
ACGATCGAACGCCTCGGTGCAAGACAGGAAGCGGCTCGACTCAAAGCGCTGATGGATCGCGGCATTGATCCTCGCGAAGA
AAGAGCGGAACAGCGCGCTGAACATGAAGCGCGCAAACTCGACGCGCTCAGGCAAAACGCGACTGTATCGGAAGCATGGG
CAGCCTACCTGGACGCACACCGTAGCAAATGGAGTGGTCGACACTACTACGATCACGAAAAGCTCGCACAAGCAGGCGGC
CTACCCTGGAAGCGCGGACGTGGGACAACGATTCCTGGGCCGCTGGCGACATTAATGCCGCTCAAGCTGACGGATCTCAA
TGCCGAGCGAGTGGCTATGTGGCTTGAAGCCGAAGCAGAAAAGCGACCAACGAACACTGAACAGAGTTACCGCAAACTGC
GTGCATTCATTCGGTGGTGCGAAGACAAACCGGAATATTCAGGGTCTATTGCACCAAATGCGTATGCCGCTCGCGCCGTG
CGCGCAGCCGTACCACGCACCAAGGCCAAAAGTGATTGTCTACAACGAGAACAACTGCTTGTGTGGTTCACGGCCGTACG
TCAGATTGACAATCCAGTTATCAGCGCATACTTACAGGGCCTCCTGCTTACCGGAGCTCGCCGCGAAGAACTCGCCGCAT
TGCGTTGGAAGGACGTGGACTTCCGCTGGCGCAGTCTGACCATGAACGACAAGATCGAGGGGACCGGCGGCCGCACTATC
CCACTTACGCCATATCTTGCGAGCCTCCTGACAAATCTCAAGCAGATGAACGAGATACCGCCGAACAGACGGCAATTGGC
CAGCCTCACCGAAAAAGGAAAGTCATGGTCCCCCTCTGAATGGGTGTTCACCAGCAACAGATCAGAGGACGGAAAGATCG
CCGAGCCCAGAAAGGCCCACAATAGTGCAATCGAAGCTGCCGGCCTGCCTCACCTTACATTGCATGGACTGCGCCGGTCG
TTCGGTACGCTTTCGGAATGGGTTGAAGTCCCTGTCGGCGTTGTTGCGCAGATCCAAGGCCACAAGCCGTCTGCGCTGGC
CGAGAAACACTATCGACGTCGGCCGCTCGATCTTTTGCGCATGTGGCACGATAAAATTGAATCGTGGATGCTGCAGCAAG
CCGGCCTTGACCATCTCCTTACGCCTGTTGCCGAGACTTACGCGAGCGATGGAGAGGCAAAGACGGCGTCGGGAAGTTGA

Upstream 100 bases:

>100_bases
TTTCAGTCCGACGCCGTACCACGATGTTGACTCGGATTGACTGACATCCCTAGAATTCCCCTACACCACGCCTACACGGC
GTTGCAAACGGGGGCTACAA

Downstream 100 bases:

>100_bases
TAGCCGCCGGCTATTACACAACACGGCTTACAGCGGGACGCTGCACAAAGCCCGATGATGCAGCAGTACCTGCGCCTTAT
CTGACAAGGGCGGGCTCACA

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MTKENFTIERVTGYECTPGRQQTIYWDKKQQGLGLRVTASGVKSYVFEGRLFGKTVRITIGSPNAWPLERHATTDAATGK
TIERLGARQEAARLKALMDRGIDPREERAEQRAEHEARKLDALRQNATVSEAWAAYLDAHRSKWSGRHYYDHEKLAQAGG
LPWKRGRGTTIPGPLATLMPLKLTDLNAERVAMWLEAEAEKRPTNTEQSYRKLRAFIRWCEDKPEYSGSIAPNAYAARAV
RAAVPRTKAKSDCLQREQLLVWFTAVRQIDNPVISAYLQGLLLTGARREELAALRWKDVDFRWRSLTMNDKIEGTGGRTI
PLTPYLASLLTNLKQMNEIPPNRRQLASLTEKGKSWSPSEWVFTSNRSEDGKIAEPRKAHNSAIEAAGLPHLTLHGLRRS
FGTLSEWVEVPVGVVAQIQGHKPSALAEKHYRRRPLDLLRMWHDKIESWMLQQAGLDHLLTPVAETYASDGEAKTASGS

Sequences:

>Translated_479_residues
MTKENFTIERVTGYECTPGRQQTIYWDKKQQGLGLRVTASGVKSYVFEGRLFGKTVRITIGSPNAWPLERHATTDAATGK
TIERLGARQEAARLKALMDRGIDPREERAEQRAEHEARKLDALRQNATVSEAWAAYLDAHRSKWSGRHYYDHEKLAQAGG
LPWKRGRGTTIPGPLATLMPLKLTDLNAERVAMWLEAEAEKRPTNTEQSYRKLRAFIRWCEDKPEYSGSIAPNAYAARAV
RAAVPRTKAKSDCLQREQLLVWFTAVRQIDNPVISAYLQGLLLTGARREELAALRWKDVDFRWRSLTMNDKIEGTGGRTI
PLTPYLASLLTNLKQMNEIPPNRRQLASLTEKGKSWSPSEWVFTSNRSEDGKIAEPRKAHNSAIEAAGLPHLTLHGLRRS
FGTLSEWVEVPVGVVAQIQGHKPSALAEKHYRRRPLDLLRMWHDKIESWMLQQAGLDHLLTPVAETYASDGEAKTASGS
>Mature_478_residues
TKENFTIERVTGYECTPGRQQTIYWDKKQQGLGLRVTASGVKSYVFEGRLFGKTVRITIGSPNAWPLERHATTDAATGKT
IERLGARQEAARLKALMDRGIDPREERAEQRAEHEARKLDALRQNATVSEAWAAYLDAHRSKWSGRHYYDHEKLAQAGGL
PWKRGRGTTIPGPLATLMPLKLTDLNAERVAMWLEAEAEKRPTNTEQSYRKLRAFIRWCEDKPEYSGSIAPNAYAARAVR
AAVPRTKAKSDCLQREQLLVWFTAVRQIDNPVISAYLQGLLLTGARREELAALRWKDVDFRWRSLTMNDKIEGTGGRTIP
LTPYLASLLTNLKQMNEIPPNRRQLASLTEKGKSWSPSEWVFTSNRSEDGKIAEPRKAHNSAIEAAGLPHLTLHGLRRSF
GTLSEWVEVPVGVVAQIQGHKPSALAEKHYRRRPLDLLRMWHDKIESWMLQQAGLDHLLTPVAETYASDGEAKTASGS

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI2367104, Length=465, Percent_Identity=48.1720430107527, Blast_Score=412, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 54019; Mature: 53888

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKENFTIERVTGYECTPGRQQTIYWDKKQQGLGLRVTASGVKSYVFEGRLFGKTVRITI
CCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCEEECCEEEEEE
GSPNAWPLERHATTDAATGKTIERLGARQEAARLKALMDRGIDPREERAEQRAEHEARKL
CCCCCCCCHHCCCCCHHCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DALRQNATVSEAWAAYLDAHRSKWSGRHYYDHEKLAQAGGLPWKRGRGTTIPGPLATLMP
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCC
LKLTDLNAERVAMWLEAEAEKRPTNTEQSYRKLRAFIRWCEDKPEYSGSIAPNAYAARAV
CEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RAAVPRTKAKSDCLQREQLLVWFTAVRQIDNPVISAYLQGLLLTGARREELAALRWKDVD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
FRWRSLTMNDKIEGTGGRTIPLTPYLASLLTNLKQMNEIPPNRRQLASLTEKGKSWSPSE
CEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
WVFTSNRSEDGKIAEPRKAHNSAIEAAGLPHLTLHGLRRSFGTLSEWVEVPVGVVAQIQG
CEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEECC
HKPSALAEKHYRRRPLDLLRMWHDKIESWMLQQAGLDHLLTPVAETYASDGEAKTASGS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TKENFTIERVTGYECTPGRQQTIYWDKKQQGLGLRVTASGVKSYVFEGRLFGKTVRITI
CCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCEEECCEEEEEE
GSPNAWPLERHATTDAATGKTIERLGARQEAARLKALMDRGIDPREERAEQRAEHEARKL
CCCCCCCCHHCCCCCHHCCHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DALRQNATVSEAWAAYLDAHRSKWSGRHYYDHEKLAQAGGLPWKRGRGTTIPGPLATLMP
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCC
LKLTDLNAERVAMWLEAEAEKRPTNTEQSYRKLRAFIRWCEDKPEYSGSIAPNAYAARAV
CEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RAAVPRTKAKSDCLQREQLLVWFTAVRQIDNPVISAYLQGLLLTGARREELAALRWKDVD
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
FRWRSLTMNDKIEGTGGRTIPLTPYLASLLTNLKQMNEIPPNRRQLASLTEKGKSWSPSE
CEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
WVFTSNRSEDGKIAEPRKAHNSAIEAAGLPHLTLHGLRRSFGTLSEWVEVPVGVVAQIQG
CEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEECC
HKPSALAEKHYRRRPLDLLRMWHDKIESWMLQQAGLDHLLTPVAETYASDGEAKTASGS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]