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The map label for this gene is 83720830

Identifier: 83720830

GI number: 83720830

Start: 479822

End: 480367

Strand: Direct

Name: 83720830

Synonym: BTH_I0436

Alternate gene names: NA

Gene position: 479822-480367 (Clockwise)

Preceding gene: 83721561

Following gene: 83718995

Centisome position: 12.6

GC content: 66.85

Gene sequence:

>546_bases
ATGCTGATTGCGGGCTGCAACCGGCAGCCGGCGTTCCAGAATCTCGACATCACCGGCAACTCGCAGTTCGCGAGCGACTT
CGCGCTGCCGGACACGACGGGCAAGATCCGCACGCTCGGCGAATTCAAGGGCAAGGCGGTCGTCGTGTTCTTCGGCTATA
CGCACTGCCCGGACGTGTGCCCGACGACGATGGCGGAGCTGTCGCAGGCGCTGCAGCAGCTCGGCCCGGACGGCAAGCGC
GTGCAGGTGCTGTTCGTCACCGTCGATCCGGAGCGCGACACCGCGGCGATCCTCGGCCAGTACGTGCCCGCGTTCAATCC
GACGTTCGTCGGCCTGCGGCCCGCCGACGAAGCGCAACTGAAGAAGGTGACGAAGGACTTCCGCGTCTACTACGCGAAGG
TGCCGGGCAAGACGCCCGGCAGCTATACGATGGACCACACCGCCGCGAGCTACGTGTTCGACCCGAGCGGCAAGCTGCGC
CTGTTCGTGCGCGACGGCCAGGGGCCGGGGCCGTGGGTTCACGATCTGAAGCTGCTGCTCGACTGA

Upstream 100 bases:

>100_bases
GGGATGTAACTCCAACGGTTCGATTCCGATGATCAAAACCCTGTTTGCACGCCGCCGCGCGCAGCGCGGCTGGCTGTTCG
CCTGCGCACTCGCGGGCGCG

Downstream 100 bases:

>100_bases
CGCCGCCGCGCGCGGCCGCGCGCCGTTGCGACACGCACCCCGAAGCGCCGGACGTTTGTCCGGCCTTCGGGGTGTTTTTC
ATTACGGCAGCGCCGGCAGA

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MLIAGCNRQPAFQNLDITGNSQFASDFALPDTTGKIRTLGEFKGKAVVVFFGYTHCPDVCPTTMAELSQALQQLGPDGKR
VQVLFVTVDPERDTAAILGQYVPAFNPTFVGLRPADEAQLKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDPSGKLR
LFVRDGQGPGPWVHDLKLLLD

Sequences:

>Translated_181_residues
MLIAGCNRQPAFQNLDITGNSQFASDFALPDTTGKIRTLGEFKGKAVVVFFGYTHCPDVCPTTMAELSQALQQLGPDGKR
VQVLFVTVDPERDTAAILGQYVPAFNPTFVGLRPADEAQLKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDPSGKLR
LFVRDGQGPGPWVHDLKLLLD
>Mature_181_residues
MLIAGCNRQPAFQNLDITGNSQFASDFALPDTTGKIRTLGEFKGKAVVVFFGYTHCPDVCPTTMAELSQALQQLGPDGKR
VQVLFVTVDPERDTAAILGQYVPAFNPTFVGLRPADEAQLKKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDPSGKLR
LFVRDGQGPGPWVHDLKLLLD

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=2e-24,
Organism=Homo sapiens, GI281182722, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=2e-24,
Organism=Homo sapiens, GI281182716, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=2e-24,
Organism=Homo sapiens, GI153791313, Length=134, Percent_Identity=38.8059701492537, Blast_Score=108, Evalue=2e-24,
Organism=Homo sapiens, GI4759068, Length=146, Percent_Identity=33.5616438356164, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17531419, Length=145, Percent_Identity=32.4137931034483, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319498, Length=135, Percent_Identity=35.5555555555556, Blast_Score=96, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=143, Percent_Identity=34.2657342657343, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=35.6643356643357, Blast_Score=113, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 19828; Mature: 19828

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIAGCNRQPAFQNLDITGNSQFASDFALPDTTGKIRTLGEFKGKAVVVFFGYTHCPDVC
CEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC
PTTMAELSQALQQLGPDGKRVQVLFVTVDPERDTAAILGQYVPAFNPTFVGLRPADEAQL
HHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCHHHH
KKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDPSGKLRLFVRDGQGPGPWVHDLKLLL
HHHHHHHEEEEEECCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHEEC
D
C
>Mature Secondary Structure
MLIAGCNRQPAFQNLDITGNSQFASDFALPDTTGKIRTLGEFKGKAVVVFFGYTHCPDVC
CEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC
PTTMAELSQALQQLGPDGKRVQVLFVTVDPERDTAAILGQYVPAFNPTFVGLRPADEAQL
HHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCHHHH
KKVTKDFRVYYAKVPGKTPGSYTMDHTAASYVFDPSGKLRLFVRDGQGPGPWVHDLKLLL
HHHHHHHEEEEEECCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHEEC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA