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The map label for this gene is dgdR [H]

Identifier: 83720657

GI number: 83720657

Start: 3221163

End: 3222023

Strand: Direct

Name: dgdR [H]

Synonym: BTH_I2806

Alternate gene names: 83720657

Gene position: 3221163-3222023 (Clockwise)

Preceding gene: 83719892

Following gene: 83718452

Centisome position: 84.56

GC content: 71.54

Gene sequence:

>861_bases
GTGGGTTTAGCAATGCGTCCGTTACCGCCTGAACTGCTGCGCAGTTTCGTCGCCGTCGCGCAGACGGGCAGCTTCACCGC
CGCGTCCGAGCGCGTGAACCTGTCGCAATCGACGGTCAGCCAGCACATCCGCCGCCTCGAAGAACTGCTCGACCGGCCGC
TGTTCGAGCGCGACACCCGCAACGTGCGGCTCGCGGCCAACGGCGAGGCGCTCTTTCGCTACGCGGTGCGCATCCTCGAG
CTGATGGACGAAGCGGTCGCGTCGGTATGCGGGCCGCCGCTGTCGGGCAAGGTGCGGCTCGGCTTGTCGGAGGATTTCGC
GCTGACGCACCTGACGGCCGCGCTCGCGAGCTTCCTGCAGCGCAACCCGGAAGTCGAGCTCGAGATCGCGACGGGCCTGT
CCGGCGACCTGTTCGACGCGCTCGACGCGGGGCGCCACGATCTCGTGTTCGCGAAGCGGATCGCCGGCAGCCGACGCGGC
CGCGTGATCCGGACCGAGCCGCTCTACTGGTGCACGGGCACCGAGTCGCCGCTCACGGGGCGCGAGCCCGTGCTGCCGCT
CGCGCTGCATCCGCAGCCGAGCGTGTCGCGCAAGCGCGTGCTCGAGACGCTCGACGCGATCGGCCGGCCCTACCGGATCG
CGGTCGCGAGCACCAGCATCGCGGTGCTGCGCGCGGCGGCGAGCGCGGGGCTCGGCATCAGCGCGTTCGCCGGCTACGTG
ATCCCGCACGGGCTCGCGAAGCTCGAAGCCGATCTGCCGCCGCTCGGCGATCTCGAATACGTGATCGACCGGCCCGCGAA
CGCGTCGCGCCCGGCGCTCGCGCTCGAGGCGACGCTCGTCGCCGCGGCGCACGAGTTCTGA

Upstream 100 bases:

>100_bases
CGGCGCGCGCCCGGCCAGGCGGGCGGCGCGCGCAGCTCGCGCCTCGCACATCGTAGTCCCACCGCCCTCGGCCATTTATG
AAGTTGTCGAATTCGATTCA

Downstream 100 bases:

>100_bases
CGGAACGCGGCGGCAAGGCGGCGAGCGCCGCGTGGGCGCGCGAGCAGCAACCGTGGAATCAAAGAAGGCGCGCGCGATCG
ATGCCGGCTCCCGACACGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MGLAMRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRLAANGEALFRYAVRILE
LMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFLQRNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRG
RVIRTEPLYWCTGTESPLTGREPVLPLALHPQPSVSRKRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
IPHGLAKLEADLPPLGDLEYVIDRPANASRPALALEATLVAAAHEF

Sequences:

>Translated_286_residues
MGLAMRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRLAANGEALFRYAVRILE
LMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFLQRNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRG
RVIRTEPLYWCTGTESPLTGREPVLPLALHPQPSVSRKRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
IPHGLAKLEADLPPLGDLEYVIDRPANASRPALALEATLVAAAHEF
>Mature_285_residues
GLAMRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVRLAANGEALFRYAVRILEL
MDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFLQRNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRGR
VIRTEPLYWCTGTESPLTGREPVLPLALHPQPSVSRKRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYVI
PHGLAKLEADLPPLGDLEYVIDRPANASRPALALEATLVAAAHEF

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=34.6456692913386, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787806, Length=138, Percent_Identity=35.5072463768116, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=33.5664335664336, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=28.4172661870504, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=142, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787589, Length=137, Percent_Identity=37.2262773722628, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081904, Length=252, Percent_Identity=26.5873015873016, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=249, Percent_Identity=27.3092369477912, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI145693105, Length=247, Percent_Identity=23.8866396761134, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=27.3858921161826, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30800; Mature: 30669

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLAMRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTR
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
NVRLAANGEALFRYAVRILELMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFLQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
RNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRGRVIRTEPLYWCTGTESPLTG
CCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCEEEECCCCCCCCC
REPVLPLALHPQPSVSRKRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHH
IPHGLAKLEADLPPLGDLEYVIDRPANASRPALALEATLVAAAHEF
HHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
GLAMRPLPPELLRSFVAVAQTGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTR
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
NVRLAANGEALFRYAVRILELMDEAVASVCGPPLSGKVRLGLSEDFALTHLTAALASFLQ
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
RNPEVELEIATGLSGDLFDALDAGRHDLVFAKRIAGSRRGRVIRTEPLYWCTGTESPLTG
CCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCEEEECCCCCCCCC
REPVLPLALHPQPSVSRKRVLETLDAIGRPYRIAVASTSIAVLRAAASAGLGISAFAGYV
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHH
IPHGLAKLEADLPPLGDLEYVIDRPANASRPALALEATLVAAAHEF
HHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]