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The map label for this gene is ccsA [H]

Identifier: 83720490

GI number: 83720490

Start: 3478484

End: 3479674

Strand: Reverse

Name: ccsA [H]

Synonym: BTH_I3034

Alternate gene names: 83720490

Gene position: 3479674-3478484 (Counterclockwise)

Preceding gene: 83719536

Following gene: 83719654

Centisome position: 91.35

GC content: 64.65

Gene sequence:

>1191_bases
ATGGATCTGACCCAAGTTTCGTCATCCCGCGCGCCGCGCGCTTCCGACGCGGCCGAGCCGGCGTTTTTCGACGACCGGCC
GTTCCTGCGCCGCCTGTCGCTCGTCGACTGGGTGTTCGCGCTCGCGCTCGTGGCCGGCGCGGGCTTCGCGCTCGCGCAGT
ACCACGCGTACATGAACTACTACGACAAGGCCGTGCTGATCGGCACCGTGCCTGCGCTCGTCGTGCTCGGCTGGCGATGG
AAACCCGCGCGGCTCCTGATGGCGGCGATCGCCGCGCTGTCGCTCTTGTCGCTGCAGATCTATCAAGGCGACCTCGCGCG
TGCCGATTCCGCTTTCCTGCTCAAGTACTTCCTGTCGAGTCAGTCGGCGATCCTGTGGATGAGCGCGCTCTTCGTGCTCG
CGACCCTTTTCTACTGGATCGGCATGCTGTCGCGCTCCGAGTCGGGCGGCGCGATCGGCCAGAAGCTCACGTGGATCGCC
GTGCTGATGGGCTTCACCGGCTTGATGGTGCGCTGGTACGAGTCGTATCTGATCGGCGCGGACGTCGGCCACATTCCGGT
GTCGAATCTCTACGAAGTCTTCGTCCTGTTCAGCCTCATCACCGCGCTTCTCTATCTGTACTACGAAGGACATTACGGCA
CGCGCGCGCTGGGTGCATTCGTGCTGCTCGTGATCAGTGCGGCGGTCGGTTTCCTGATGTGGTACTCGATCGCGCGCGAC
GCGCAGCAGATTCAGCCGCTCGTGCCCGCGCTGCAGAGCTGGTGGATGAAGATCCACGTGCCCGCGAACTTCATCGGCTA
CGGCAGCTTCGCGCTGTCCGCGATGGTCGCGGTCGCGTATCTGACGAAGGAGCGCGGCGTGCTCGCCGATCGCCTGCCGG
CGCTCGAGGTGCTCGACGACGTGATGTACAAGTCGATCGCGGTCGGCTTTGCGTTCTTCACGATCGCGACGATTCTCGGC
GCACTGTGGGCGGCCGAGGCGTGGGGCGGCTATTGGAGCTGGGACCCGAAGGAGACCTGGGCGCTCATCGTCTGGCTGAA
CTACGCGGCATGGCTGCACATGCGTCTGATGAAAGGGCTGCGCGGCACGGTTGCCGCGTGGTGGGCGCTGACGGGCCTTC
TCGTCACGACCTTCGCGTTCCTCGGCGTCAACATGTTCCTGTCCGGCTTGCACAGTTACGGCAAGCTGTAA

Upstream 100 bases:

>100_bases
TTCGTGCGCACGCGCGACGCGGCCGGGGCCGCGCTGGGCGCGCCGCCAGCCTCCCGCGCGCCCGACGGCGCCGGCACCAA
GGACTCGACTCGGTAACATC

Downstream 100 bases:

>100_bases
GATCCGCGCCGCTCGAACGACTAATGACCGCCGACGCACTGCGTGCTCGGCGGTTTTTTCTTGCGCGGGCGATTCGGCGC
TACGCTGTCGAAACGGCCGG

Product: cytochrome c assembly family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDLTQVSSSRAPRASDAAEPAFFDDRPFLRRLSLVDWVFALALVAGAGFALAQYHAYMNYYDKAVLIGTVPALVVLGWRW
KPARLLMAAIAALSLLSLQIYQGDLARADSAFLLKYFLSSQSAILWMSALFVLATLFYWIGMLSRSESGGAIGQKLTWIA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLTKERGVLADRLPALEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Sequences:

>Translated_396_residues
MDLTQVSSSRAPRASDAAEPAFFDDRPFLRRLSLVDWVFALALVAGAGFALAQYHAYMNYYDKAVLIGTVPALVVLGWRW
KPARLLMAAIAALSLLSLQIYQGDLARADSAFLLKYFLSSQSAILWMSALFVLATLFYWIGMLSRSESGGAIGQKLTWIA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLTKERGVLADRLPALEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
>Mature_396_residues
MDLTQVSSSRAPRASDAAEPAFFDDRPFLRRLSLVDWVFALALVAGAGFALAQYHAYMNYYDKAVLIGTVPALVVLGWRW
KPARLLMAAIAALSLLSLQIYQGDLARADSAFLLKYFLSSQSAILWMSALFVLATLFYWIGMLSRSESGGAIGQKLTWIA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLTKERGVLADRLPALEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 44012; Mature: 44012

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA