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The map label for this gene is gspD [H]

Identifier: 83720377

GI number: 83720377

Start: 8351

End: 10585

Strand: Direct

Name: gspD [H]

Synonym: BTH_I0007

Alternate gene names: 83720377

Gene position: 8351-10585 (Clockwise)

Preceding gene: 83719600

Following gene: 83718589

Centisome position: 0.22

GC content: 66.13

Gene sequence:

>2235_bases
TTGCGGCGCGTCGCAACGGCGCTCGTCGTCGCCGGAATTGTCGCCGCGCAGGCCGCTCACGCTCAGGTCACGCTCAATTT
CGTCAATGCGGACATCGACCAGGTCGCGAAGGCGATCGGCGCCGCGACGGGCAAGACGATCATCGTCGATCCGCGCGTCA
AGGGGCAGTTGAATCTCGTCGCCGAGCGCGCCGTGCCGGAAGATCAGGCATTGAAGACGCTGCAGTCCGCGCTCCGGATG
CAAGGTTTCGCGCTCGTCCAGGATCACGGCGTCCTGAAGGTCGTGCCGGAAGCCGACGCGAAGCTGCAGGGCGTGCCGAC
CTACATCGGCAACACGCCGCAGGCGCATGGCGATCAGGTCGTCACGCAAGTGTTCGAACTGCGCAACGAGTCGGCGAACA
ACTTGCTTCCGGTGCTGCGCCCGCTGATCTCGCCGAACAACACGATCACCGCGTATCCGGCCAACAACACGATCGTCGTC
ACCGATTACGCGGACAACGTGCGCCGGATCGCGCGGATCATCGCGGGCGTCGACAACGCGGCAGGCGCGCAGGTTGCCGT
CGTGCCGCTGAAGAACGCGAACGCGATCGACATCGCCGCGCAGCTCACGAAGCTGCTCGACCCGGGCGCGATCGGCAACA
CCGACGCGACGCTGAAAGTCACCGTGCAGGCCGATCCGCGTACCAACGCGCTGCTTTTGCGCGCATCGAACACGCAGCGC
CTCGCCGCGGCGAAGAAGATCGCGCAGCAGCTCGACGCGCCAAGCGGCGTGCCGGGCAACATGCATGTCGTGCCGTTGCG
CAACGCCGATGCGGTGAAGCTCGCGAAGACGCTGCGCGGGATGCTCGGCAAGGGCGGCGGCGAAAGCGGCTCGTCGGCGA
GCTCGAACGACGCGAATGCGTTCAATCAGGGCGGCTCGCAGAGCGGCTCGAATTTCTCGACGGGCACTTCGGGCACGCCG
CCGCTGCCGTCGGGGCTGTCGTCCGGCTCGTCGGGCGGCATGGGCGGCACGATGGGAGGCGGCGGGCTCGGTACCGCCGG
CCTGCTGGGCGGCGACAAGGACAAGAGCGACGAGAATCAGCCGGGCGGCATGATCCAGGCCGACTCGGCGACGAATTCGC
TCATCATCACCGCGTCGGACCCGGTGTACCGGAACCTGCGTGCGGTGATCGACCAGCTCGATGCGCGGCGCGCGCAGGTG
TACATCGAGGCGCTTGTCGTCGAGCTGAACTCGACGACGAACGCGAACCTCGGGATTCAGTGGCAGGTCGCCAACAACGC
GCTCTATGCAGGCACGAACCTGCCGACGGGAGGCGTGGGCGGCGGCAACAGCATCGTCGACCTGACAACCCGGGCCGCGA
CGTCGGCCGTCGGTGCGATCAGCACGCTCACGCCGGGGCTCAACATCGGCTGGTTGCACAACATGTTCGGCATCCAGGGG
CTCGGCGGGTTGCTGCAGTATTTTTCCGGCGTGAGCGACGCGAACGTGCTGTCGACGCCGAACCTCGTGACGCTCGACAA
TGAGGAAGCGAAGATCGTCGTCGGCCAGAACGTGCCGATTCCGACCGGCTCGTATTCGAATCTGACGAGCGGCAACACGA
ACAATGCGTTCAACACATACGACCGGCGCGATGTCGGCCTGACGCTGCACGTGAAACCGCAGATCACCGAAGGCGGGATT
CTGAAGCTGCAGCTGTACACGGAGGACTCCTCGGTCGTGAATACCACGGTCAACAACCAGTCCGGCCCGACGTTCAACAA
GCGCTCGATCCAGTCGACCGTGCTGGCCGACAACGGCGAGATCATCGTGCTCGGCGGCCTGATGCAGGACAACTATCAGG
TTTCGAACAGCAAGGTGCCGCTGCTCGGCGACATTCCGTGGATCGGCCAGTTGTTCCGCTCCGAAGGCAAGACGCGCCAG
AAGACGAACCTGATGGTGTTCCTGCGTCCCGTGATCATCACCGATCGCGAGACCGCGCAGGCGGTGACCTCGAACCGCTA
CGACTACATCCAGGGCGTGACGGGCGCGTACAAGTCGGACAACAACATCATCCGCGACAAGGACGACCCCGTCGTCCCGC
CGATGCCGCTCGGCCCGAGCCAGGGCGGCTCGCCCGCGATGAACCTGTTCGACATCGACAAGATGCGGCGCCAGCAGCTC
GTTGCGCCCGCGCCCGCCAGCGCGCCCGCGGCGGCGAGCGACGCCGGCGCCGCATCGTCGGGAGCCCGTCCGTGA

Upstream 100 bases:

>100_bases
TGCTAATGTCTGCTTTTTTGATCCTGACCTTACGTAATACCATCGGAAACGGCCGCCGCCGGCATCGATCCATCAATCCA
TGACAAGAACTCGCTTTGCT

Downstream 100 bases:

>100_bases
CGCAGGCGCTCGCGCAAGGCGCTCAGGATCAGCCTGCCGCGAGCGCGCCGTCGCCGCTCGCCGCGCGGCTGTTGCCGTAC
GGCTTCGCGAAGGCCGGCCA

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERAVPEDQALKTLQSALRM
QGFALVQDHGVLKVVPEADAKLQGVPTYIGNTPQAHGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVV
TDYADNVRRIARIIAGVDNAAGAQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNTQR
LAAAKKIAQQLDAPSGVPGNMHVVPLRNADAVKLAKTLRGMLGKGGGESGSSASSNDANAFNQGGSQSGSNFSTGTSGTP
PLPSGLSSGSSGGMGGTMGGGGLGTAGLLGGDKDKSDENQPGGMIQADSATNSLIITASDPVYRNLRAVIDQLDARRAQV
YIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQG
LGGLLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGI
LKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQ
KTNLMVFLRPVIITDRETAQAVTSNRYDYIQGVTGAYKSDNNIIRDKDDPVVPPMPLGPSQGGSPAMNLFDIDKMRRQQL
VAPAPASAPAAASDAGAASSGARP

Sequences:

>Translated_744_residues
MRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERAVPEDQALKTLQSALRM
QGFALVQDHGVLKVVPEADAKLQGVPTYIGNTPQAHGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVV
TDYADNVRRIARIIAGVDNAAGAQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNTQR
LAAAKKIAQQLDAPSGVPGNMHVVPLRNADAVKLAKTLRGMLGKGGGESGSSASSNDANAFNQGGSQSGSNFSTGTSGTP
PLPSGLSSGSSGGMGGTMGGGGLGTAGLLGGDKDKSDENQPGGMIQADSATNSLIITASDPVYRNLRAVIDQLDARRAQV
YIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQG
LGGLLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGI
LKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQ
KTNLMVFLRPVIITDRETAQAVTSNRYDYIQGVTGAYKSDNNIIRDKDDPVVPPMPLGPSQGGSPAMNLFDIDKMRRQQL
VAPAPASAPAAASDAGAASSGARP
>Mature_744_residues
MRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLVAERAVPEDQALKTLQSALRM
QGFALVQDHGVLKVVPEADAKLQGVPTYIGNTPQAHGDQVVTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVV
TDYADNVRRIARIIAGVDNAAGAQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNTQR
LAAAKKIAQQLDAPSGVPGNMHVVPLRNADAVKLAKTLRGMLGKGGGESGSSASSNDANAFNQGGSQSGSNFSTGTSGTP
PLPSGLSSGSSGGMGGTMGGGGLGTAGLLGGDKDKSDENQPGGMIQADSATNSLIITASDPVYRNLRAVIDQLDARRAQV
YIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQG
LGGLLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGI
LKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQ
KTNLMVFLRPVIITDRETAQAVTSNRYDYIQGVTGAYKSDNNIIRDKDDPVVPPMPLGPSQGGSPAMNLFDIDKMRRQQL
VAPAPASAPAAASDAGAASSGARP

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=675, Percent_Identity=32.1481481481481, Blast_Score=278, Evalue=1e-75,
Organism=Escherichia coli, GI1789793, Length=295, Percent_Identity=27.7966101694915, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 77268; Mature: 77268

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLV
CCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCEEEE
AERAVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYIGNTPQAHGDQV
EHHCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHCCCCCCCCHHHH
VTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVVTDYADNVRRIARIIAGVDNA
HHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHCCCCC
AGAQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNTQR
CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCHH
LAAAKKIAQQLDAPSGVPGNMHVVPLRNADAVKLAKTLRGMLGKGGGESGSSASSNDANA
HHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
FNQGGSQSGSNFSTGTSGTPPLPSGLSSGSSGGMGGTMGGGGLGTAGLLGGDKDKSDENQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGGMIQADSATNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELNSTTNANLGIQ
CCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCEEEE
WQVANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQG
EEEECCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LGGLLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTY
HHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
DRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGE
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHCEEEEECCCC
IIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ
EEEEECEECCCEEECCCCCCEEECCHHHHHHHHHCCCCCHHCCEEEEEEEEEEECCHHHH
AVTSNRYDYIQGVTGAYKSDNNIIRDKDDPVVPPMPLGPSQGGSPAMNLFDIDKMRRQQL
HHHCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC
VAPAPASAPAAASDAGAASSGARP
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRVATALVVAGIVAAQAAHAQVTLNFVNADIDQVAKAIGAATGKTIIVDPRVKGQLNLV
CCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCCCEEEE
AERAVPEDQALKTLQSALRMQGFALVQDHGVLKVVPEADAKLQGVPTYIGNTPQAHGDQV
EHHCCCHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCCCCCCCHHCCCCCCCCHHHH
VTQVFELRNESANNLLPVLRPLISPNNTITAYPANNTIVVTDYADNVRRIARIIAGVDNA
HHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHCCCCC
AGAQVAVVPLKNANAIDIAAQLTKLLDPGAIGNTDATLKVTVQADPRTNALLLRASNTQR
CCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCHH
LAAAKKIAQQLDAPSGVPGNMHVVPLRNADAVKLAKTLRGMLGKGGGESGSSASSNDANA
HHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
FNQGGSQSGSNFSTGTSGTPPLPSGLSSGSSGGMGGTMGGGGLGTAGLLGGDKDKSDENQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGGMIQADSATNSLIITASDPVYRNLRAVIDQLDARRAQVYIEALVVELNSTTNANLGIQ
CCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCEEEE
WQVANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQG
EEEECCEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LGGLLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTY
HHHHHHHHCCCCCCCEECCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
DRRDVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGE
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHCEEEEECCCC
IIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ
EEEEECEECCCEEECCCCCCEEECCHHHHHHHHHCCCCCHHCCEEEEEEEEEEECCHHHH
AVTSNRYDYIQGVTGAYKSDNNIIRDKDDPVVPPMPLGPSQGGSPAMNLFDIDKMRRQQL
HHHCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC
VAPAPASAPAAASDAGAASSGARP
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]