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The map label for this gene is ycdC [C]

Identifier: 83720278

GI number: 83720278

Start: 1098152

End: 1098784

Strand: Direct

Name: ycdC [C]

Synonym: BTH_I0972

Alternate gene names: 83720278

Gene position: 1098152-1098784 (Clockwise)

Preceding gene: 83721305

Following gene: 83721002

Centisome position: 28.83

GC content: 61.14

Gene sequence:

>633_bases
ATGAATCAGCCAAAAATCAAAAGAGACCCAGAGGGAACCCGGCGCCGGATCCTGCTCGCGGCGGCCGAAGAGTTCGCGAC
AGGGGGGCTGTTCGGTGCGCGAGTCGATCAGATCGCGCGCCGCGCCGAAACCAACGAGCGCATGCTCTATTACTACTTCG
GCAGCAAGGAGCTGTTGTTCACCGCAGTGCTCGAATATGCGTTTTCCGCGTTGATGGAGGCCGAGCGGACGATCGACCTG
GACGGCGTCGCGCCCGTCGAGGCGATCACGCGGCTCGCGCATTTCGTGTGGGACTATTACCGCGATCATCCCGATCTGCT
GCGCCTGCTCAACAACGAGAACCTGCACGAGGCGCGCTATTTGCAGAAATCGACGCGCATCCGCGAGATGATCTCGCCGA
TCGTCAAGACGCTCGACGGCGTGCTCGAGCGCGGTCAGAAGGCGGGGCTCTTTCGCACCGACATCGATCCGCTGCGGTTC
TACGTGACGTTATCGGGGCTCGGCTACTACATGGTGTCGAACCGCTTCACGCTCGCCGCGATATTCGGGCGCGATTTCAG
CGTGCAGCAGGAGCGTGCCGAGATGATCAAGATGAACACCGAGTTGCTGCTGGCGTTTCTGTTGAGGCGCTGA

Upstream 100 bases:

>100_bases
GGTGTCCCTTAACGATGGCGCGCCCGTTCACGCCGCCGGCGATCGACGCGGGGCCTGCGGCGCGAGCCGGACTACGCGGC
TCACATAGCAAAACGCCACT

Downstream 100 bases:

>100_bases
GCGGGCCGGGCGCCCGGATGCGGCCGAGCGCGGCGCGAAGATGTCGCGCCGCCCCAGAAAATTGCGCGCCGCTCGCGCTC
GGTCGCGCGAAGCGGCGCGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNQPKIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKELLFTAVLEYAFSALMEAERTIDL
DGVAPVEAITRLAHFVWDYYRDHPDLLRLLNNENLHEARYLQKSTRIREMISPIVKTLDGVLERGQKAGLFRTDIDPLRF
YVTLSGLGYYMVSNRFTLAAIFGRDFSVQQERAEMIKMNTELLLAFLLRR

Sequences:

>Translated_210_residues
MNQPKIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKELLFTAVLEYAFSALMEAERTIDL
DGVAPVEAITRLAHFVWDYYRDHPDLLRLLNNENLHEARYLQKSTRIREMISPIVKTLDGVLERGQKAGLFRTDIDPLRF
YVTLSGLGYYMVSNRFTLAAIFGRDFSVQQERAEMIKMNTELLLAFLLRR
>Mature_210_residues
MNQPKIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKELLFTAVLEYAFSALMEAERTIDL
DGVAPVEAITRLAHFVWDYYRDHPDLLRLLNNENLHEARYLQKSTRIREMISPIVKTLDGVLERGQKAGLFRTDIDPLRF
YVTLSGLGYYMVSNRFTLAAIFGRDFSVQQERAEMIKMNTELLLAFLLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24367; Mature: 24367

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPKIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKELLF
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
TAVLEYAFSALMEAERTIDLDGVAPVEAITRLAHFVWDYYRDHPDLLRLLNNENLHEARY
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHH
LQKSTRIREMISPIVKTLDGVLERGQKAGLFRTDIDPLRFYVTLSGLGYYMVSNRFTLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEECCCCEEECCCCEEEEE
IFGRDFSVQQERAEMIKMNTELLLAFLLRR
EECCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQPKIKRDPEGTRRRILLAAAEEFATGGLFGARVDQIARRAETNERMLYYYFGSKELLF
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
TAVLEYAFSALMEAERTIDLDGVAPVEAITRLAHFVWDYYRDHPDLLRLLNNENLHEARY
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHH
LQKSTRIREMISPIVKTLDGVLERGQKAGLFRTDIDPLRFYVTLSGLGYYMVSNRFTLAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEECCCCEEECCCCEEEEE
IFGRDFSVQQERAEMIKMNTELLLAFLLRR
EECCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA