Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 83719905

GI number: 83719905

Start: 439097

End: 440302

Strand: Direct

Name: yfdE [H]

Synonym: BTH_I0396

Alternate gene names: 83719905

Gene position: 439097-440302 (Clockwise)

Preceding gene: 83718417

Following gene: 83718460

Centisome position: 11.53

GC content: 73.05

Gene sequence:

>1206_bases
ATGCGCAACGAACCGGGCGCGCAGCCGCTCGCGGGTATCAAGGTGCTCGACTTCTCGCGCGTGCTCGCCGGGCCGTGGTG
CGCGATGGTGCTCGCGGATCTCGGCGCGGAGGTGATCAAGGTCGAGCATCCGCGGCGCGGCGACGACACGCGCGACTGGG
GCCTGCGCGTGGGCGACACCGAGACGACCTACTTCAACAGCGTGAACCGCAGCAAGCGCTCGATCTGCGTCGATCTGCAG
ACGGAAGCGGGGCGGCGCATCGCGCGCGGGCTCGCCGCGCAGGCGGACGTCGTCGTGCACAACTTCAAGGCGGGCGGCGC
GGAGAAGCTCGGCCTGGGCTACGACGCGCTCGCCGAGCTCAATCCGCGGCTCGTCCACTGCGCGATCTCCGGCTACGACC
GCTCCGGCCCCGAAGCGAGCCGGCCGGGCTACGACCTCGTCGTGCAGGGCGAGGCCGGCCTGATGGCGCTGAACGGCGAA
GCCGGGCGGCCGCCGCTGAAGTTCGGCGTCGCGGTGGCGGACCTCTTCACCGGCATGTACTCGGCGCAGGCGATCCTCGC
CGCGCTCTACGAGCGGCACGCGACGGGGCGCGGGCGGCGCATCGAGATGGCGCTGTTCGATTGCGGGCTGATGGTCACGT
CGTACTACGGGCTCGAAGCGCTGCTGATGGGCGAGGACCCGCCGCGCTACGGCAACGCGCATCCGTCGATCGTGCCGTAC
GGCGTGTTCGACGCGGCGGACGGCCCGATCGTGATCACGGTCGGCAACAACCCGCAGTTCGCGCGCTTTTGCGACGTGAT
CGGCCGGCCGGAGCTCGCGGCCGACGCGCGCTTCGCGACGAACATCGCGCGCTCCGCGAATCGCGCGGAACTGCTGCCGG
AGATCCTCCGCGAGCTCGGCCGCCGGCCGCGCGCGGCGCTGCTCGCGGCGCTCGCCGACGCGGGCATTCCGTGCGGCGAG
GTGCTCGGCTTGCGCGAGGCGCTCATGTCCGAGCGCGCGCGATCGGCGGGGCTCGTCACGCGGCAGCCGCATCCGGTCGC
GGGCGATGTCGACGTGCTCGCGCCGCCGTACCGGTTCGACGGCGAGCGCCTGCCCGTGCGCGGCGCGCCGCCCGTGCTCG
GCGCGGATACCGAGCGCGTGCTCGGCGACTGGCTCGGGATGTCCGGGCCCGAGATCGCGCAACTGCGAAGCGAGCGCGTC
GTGTGA

Upstream 100 bases:

>100_bases
CTCGTGATGATCGATCACCAGCTCGGCGACGAGGATCACCACCTCGCGCGCTATGTCGCGCTGTCGAAGCAATAGCCGCC
AACGAACGGAGGAGACGAAG

Downstream 100 bases:

>100_bases
GCGCGGCGGACGGCAGACCGCAAGACAGTAAGACCGCAAGACCGCAAGACCGCAAGACCGCAAGACCGCAAGACCGCAAG
ACCGCCGCGCCGGCGGCAAC

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRNEPGAQPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKVEHPRRGDDTRDWGLRVGDTETTYFNSVNRSKRSICVDLQ
TEAGRRIARGLAAQADVVVHNFKAGGAEKLGLGYDALAELNPRLVHCAISGYDRSGPEASRPGYDLVVQGEAGLMALNGE
AGRPPLKFGVAVADLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAELLPEILRELGRRPRAALLAALADAGIPCGE
VLGLREALMSERARSAGLVTRQPHPVAGDVDVLAPPYRFDGERLPVRGAPPVLGADTERVLGDWLGMSGPEIAQLRSERV
V

Sequences:

>Translated_401_residues
MRNEPGAQPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKVEHPRRGDDTRDWGLRVGDTETTYFNSVNRSKRSICVDLQ
TEAGRRIARGLAAQADVVVHNFKAGGAEKLGLGYDALAELNPRLVHCAISGYDRSGPEASRPGYDLVVQGEAGLMALNGE
AGRPPLKFGVAVADLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAELLPEILRELGRRPRAALLAALADAGIPCGE
VLGLREALMSERARSAGLVTRQPHPVAGDVDVLAPPYRFDGERLPVRGAPPVLGADTERVLGDWLGMSGPEIAQLRSERV
V
>Mature_401_residues
MRNEPGAQPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKVEHPRRGDDTRDWGLRVGDTETTYFNSVNRSKRSICVDLQ
TEAGRRIARGLAAQADVVVHNFKAGGAEKLGLGYDALAELNPRLVHCAISGYDRSGPEASRPGYDLVVQGEAGLMALNGE
AGRPPLKFGVAVADLFTGMYSAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAELLPEILRELGRRPRAALLAALADAGIPCGE
VLGLREALMSERARSAGLVTRQPHPVAGDVDVLAPPYRFDGERLPVRGAPPVLGADTERVLGDWLGMSGPEIAQLRSERV
V

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=394, Percent_Identity=38.3248730964467, Blast_Score=289, Evalue=2e-78,
Organism=Homo sapiens, GI300863124, Length=420, Percent_Identity=36.4285714285714, Blast_Score=278, Evalue=5e-75,
Organism=Homo sapiens, GI300863126, Length=394, Percent_Identity=34.2639593908629, Blast_Score=234, Evalue=7e-62,
Organism=Homo sapiens, GI13376042, Length=420, Percent_Identity=33.0952380952381, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI266456254, Length=396, Percent_Identity=27.020202020202, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI42794625, Length=396, Percent_Identity=27.020202020202, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI266458393, Length=254, Percent_Identity=31.496062992126, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI266458397, Length=254, Percent_Identity=31.496062992126, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=328, Percent_Identity=36.5853658536585, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=30.4556354916067, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1786222, Length=332, Percent_Identity=26.5060240963855, Blast_Score=95, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=204, Percent_Identity=28.4313725490196, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=264, Percent_Identity=24.2424242424242, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=41.1616161616162, Blast_Score=301, Evalue=4e-82,
Organism=Drosophila melanogaster, GI24585488, Length=273, Percent_Identity=27.4725274725275, Blast_Score=99, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42970; Mature: 42970

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNEPGAQPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKVEHPRRGDDTRDWGLRVGDT
CCCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCCHHCCEEECCC
ETTYFNSVNRSKRSICVDLQTEAGRRIARGLAAQADVVVHNFKAGGAEKLGLGYDALAEL
CHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGPEASRPGYDLVVQGEAGLMALNGEAGRPPLKFGVAVADLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAELLPEILRELG
EEEECCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
RRPRAALLAALADAGIPCGEVLGLREALMSERARSAGLVTRQPHPVAGDVDVLAPPYRFD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GERLPVRGAPPVLGADTERVLGDWLGMSGPEIAQLRSERVV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MRNEPGAQPLAGIKVLDFSRVLAGPWCAMVLADLGAEVIKVEHPRRGDDTRDWGLRVGDT
CCCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCCEEEECCCCCCCCCHHCCEEECCC
ETTYFNSVNRSKRSICVDLQTEAGRRIARGLAAQADVVVHNFKAGGAEKLGLGYDALAEL
CHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHC
NPRLVHCAISGYDRSGPEASRPGYDLVVQGEAGLMALNGEAGRPPLKFGVAVADLFTGMY
CCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
SAQAILAALYERHATGRGRRIEMALFDCGLMVTSYYGLEALLMGEDPPRYGNAHPSIVPY
HHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEE
GVFDAADGPIVITVGNNPQFARFCDVIGRPELAADARFATNIARSANRAELLPEILRELG
EEEECCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
RRPRAALLAALADAGIPCGEVLGLREALMSERARSAGLVTRQPHPVAGDVDVLAPPYRFD
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GERLPVRGAPPVLGADTERVLGDWLGMSGPEIAQLRSERVV
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]