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The map label for this gene is yafC [C]

Identifier: 83719799

GI number: 83719799

Start: 1579170

End: 1580150

Strand: Reverse

Name: yafC [C]

Synonym: BTH_I1403

Alternate gene names: 83719799

Gene position: 1580150-1579170 (Counterclockwise)

Preceding gene: 83721048

Following gene: 83720605

Centisome position: 41.48

GC content: 67.48

Gene sequence:

>981_bases
ATGAACCAAATCCAGACCATGCGTGTCTTCGTATGTGTTGCCGAACTGCAGAGCTTCCGCCGGGCGGCGCGGAAACTCGG
CGTATCGAATGCGCTCGTCACGCGTTCGATCGCGATGCTCGAAACACATCTGAACACGCGTCTCATCCATCGCACGACAC
GCAATCTGTCGCTGACGGAAGCGGGCATCCGCTACCTCGACGGCTGCCGGGCGCTCCTCGAGGAATTCGATCAGCTCGAG
GCGTCCGTCGAGCGAGCGGTGCACGAGCCCGTCGGCACGTTGCGCGTCGCCGTGTCCGGGCTGCTGTCGCCCGGCCGGAT
CACCCCGCTCGTCGACAGCTACCGGCGCCAGTACCCGAAGGTGCGCGTGCAGTTGACGCTGACCGAGGGGCAGCTCGACG
TGATCGAAGCCGGCTACGACGCGGGCCTCGTCACGGGCGGCCGCCTCGACGGCAACCCGGCGCTCATCGGTCATCCGCTG
ATGCCGAACACGCTCGCGCTCTGCGCGGCGCCCTCGTACATCGAGCGGCACGGCGCGCCGCACCGCCCCGACGATCTCAT
CCGCCACGCGTGCATCGCGCTGCCGGCCGGCCAGCATGCATCGACCTGGCGCTTCGTCGATCCGGACCACTTCACGCACG
TCGTGTCGCTGCAGCCGGTCTATACGGTCAACAGCGCGTCGATGGTGCGCGCGGCGACGCTCGCCGGCACCGGCATCTCC
GTGCTGCCGGAAAGCTACATCGCCGATGCGCTCGAAAGCGGCGAGCTCGTTCGGATTCTCGGCGATTACCGGATCGACGA
TCCCGACACGCAGTTGTCCATCGTCTATCCGAACCGCCAGTTCCTGCCGGCGCGCACGCGCAGCTTCGTCGAGCACGCGC
TGTACCACCTCGGCGGGCAGAAGACCGAGACGAACGGCCACTACTTCATGCGCGAAGCCGGCACGGCGAAGCGCCCGGAC
GTCGTCGCCGGGCTCCAGTGA

Upstream 100 bases:

>100_bases
TCGTTATTTAAGACAAGCCCTGTGCTGATCCGACAGCCGCGGCTCGCCATGATCGAAGGCGAAAAACACAACATAATCAT
TTAATGGGCCAACGAAAGCT

Downstream 100 bases:

>100_bases
CGCCCGGCTGAAGTAAACTGACGCGCACCTTTACCGGAGGCCAAGCGTGCGCGTGATTCTTTTCAGCAGCCGGCAGTACG
ACCACGATTCGTTCGATGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYLDGCRALLEEFDQLE
ASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLTLTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPL
MPNTLALCAAPSYIERHGAPHRPDDLIRHACIALPAGQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQKTETNGHYFMREAGTAKRPD
VVAGLQ

Sequences:

>Translated_326_residues
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYLDGCRALLEEFDQLE
ASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLTLTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPL
MPNTLALCAAPSYIERHGAPHRPDDLIRHACIALPAGQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQKTETNGHYFMREAGTAKRPD
VVAGLQ
>Mature_326_residues
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTEAGIRYLDGCRALLEEFDQLE
ASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPKVRVQLTLTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPL
MPNTLALCAAPSYIERHGAPHRPDDLIRHACIALPAGQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQKTETNGHYFMREAGTAKRPD
VVAGLQ

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=30.7167235494881, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=30.1324503311258, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=30.3754266211604, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=27.6094276094276, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789639, Length=267, Percent_Identity=29.2134831460674, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=28.719723183391, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789440, Length=260, Percent_Identity=28.4615384615385, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787879, Length=310, Percent_Identity=27.4193548387097, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789173, Length=294, Percent_Identity=25.5102040816327, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI145693105, Length=170, Percent_Identity=28.8235294117647, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=24.0549828178694, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=122, Percent_Identity=33.6065573770492, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=259, Percent_Identity=24.7104247104247, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35890; Mature: 35890

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AGIRYLDGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCE
VRVQLTLTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAP
EEEEEEEECCCEEEEECCCCCCEEECCEECCCCCEEECCCCCCHHHHHCCCHHHHHCCCC
HRPDDLIRHACIALPAGQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
CCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECEEEEECCHHHHHHHHHCCCCHH
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQ
HCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
KTETNGHYFMREAGTAKRPDVVAGLQ
CCCCCCCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNQIQTMRVFVCVAELQSFRRAARKLGVSNALVTRSIAMLETHLNTRLIHRTTRNLSLTE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
AGIRYLDGCRALLEEFDQLEASVERAVHEPVGTLRVAVSGLLSPGRITPLVDSYRRQYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCE
VRVQLTLTEGQLDVIEAGYDAGLVTGGRLDGNPALIGHPLMPNTLALCAAPSYIERHGAP
EEEEEEEECCCEEEEECCCCCCEEECCEECCCCCEEECCCCCCHHHHHCCCHHHHHCCCC
HRPDDLIRHACIALPAGQHASTWRFVDPDHFTHVVSLQPVYTVNSASMVRAATLAGTGIS
CCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEECEEEEECCHHHHHHHHHCCCCHH
VLPESYIADALESGELVRILGDYRIDDPDTQLSIVYPNRQFLPARTRSFVEHALYHLGGQ
HCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCC
KTETNGHYFMREAGTAKRPDVVAGLQ
CCCCCCCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]