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The map label for this gene is nodD1 [H]

Identifier: 83719575

GI number: 83719575

Start: 1137457

End: 1137807

Strand: Reverse

Name: nodD1 [H]

Synonym: BTH_I0999

Alternate gene names: 83719575

Gene position: 1137807-1137457 (Counterclockwise)

Preceding gene: 83720091

Following gene: 83718511

Centisome position: 29.87

GC content: 72.36

Gene sequence:

>351_bases
ATGGGAAATATGTCGGCCGAATGGCGCGGCGCCGACCTCGCGCTGCTCGCCGCACTCGACGTGCTGCTCGAAGAGGCGAA
CGTGACGCGCGCGACCGCGCGGCTGCATTTGAGCCAGCCGGCGTTGTCCGCGCAGCTCGCGAGGCTGCGCGAGCTGATCG
GCGATCCGCTGCTGCTGCCCGCGAAGAACGGCCGCGGCATGGTGCCGACCGCGCGGGCGCTCGCGCTGCAGGGCCCGTTG
CGCGGCGCGCTGCGCGAGTTGCAGGCCGCGCGCTGCGTCACGGCGCCGCGTTCGATCCCGCGACCGACGAACGCACGTTC
CAGATCGTCGCGAGCGACAACGGCTTCGTGA

Upstream 100 bases:

>100_bases
CCTCGAAAGTCCGGTCGCGGCCACCGAAACCGCGTCTCGCGACAGTCTGCGCATCCCGTTGATATATTTGAAATCGATTC
TTCGTATTGGAGCCATTTAC

Downstream 100 bases:

>100_bases
TGGCGGGCCTCGATCTCGTGCGGCGCGTCGCGGCGCATGCGCCGGGCGTGCGCCTCGCGTTCCGCAATGTGCCCGCCAAC
GCCGCGGGCGCACTGCTCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MGNMSAEWRGADLALLAALDVLLEEANVTRATARLHLSQPALSAQLARLRELIGDPLLLPAKNGRGMVPTARALALQGPL
RGALRELQAARCVTAPRSIPRPTNARSRSSRATTAS

Sequences:

>Translated_116_residues
MGNMSAEWRGADLALLAALDVLLEEANVTRATARLHLSQPALSAQLARLRELIGDPLLLPAKNGRGMVPTARALALQGPL
RGALRELQAARCVTAPRSIPRPTNARSRSSRATTAS
>Mature_115_residues
GNMSAEWRGADLALLAALDVLLEEANVTRATARLHLSQPALSAQLARLRELIGDPLLLPAKNGRGMVPTARALALQGPLR
GALRELQAARCVTAPRSIPRPTNARSRSSRATTAS

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=80, Percent_Identity=45, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 12299; Mature: 12168

Theoretical pI: Translated: 12.20; Mature: 12.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNMSAEWRGADLALLAALDVLLEEANVTRATARLHLSQPALSAQLARLRELIGDPLLLP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE
AKNGRGMVPTARALALQGPLRGALRELQAARCVTAPRSIPRPTNARSRSSRATTAS
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GNMSAEWRGADLALLAALDVLLEEANVTRATARLHLSQPALSAQLARLRELIGDPLLLP
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE
AKNGRGMVPTARALALQGPLRGALRELQAARCVTAPRSIPRPTNARSRSSRATTAS
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631662 [H]